PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g25550.3 | ||||||||
Common Name | LR48_Vigan02g009300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NF-YC | ||||||||
Protein Properties | Length: 167aa MW: 18252.3 Da PI: 4.3844 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 135.3 | 1.7e-42 | 1 | 81 | 21 | 101 |
NF-YC 21 lPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprdel 101 lPlarik+i+k+dedv+m+saeaPvll+kace+fi+elt+r+w + eenkrrtl k+diaaa+++td++dflvdivpr+++ Vang06g25550.3 1 LPLARIKRIMKSDEDVRMVSAEAPVLLAKACEMFIMELTMRAWGNVEENKRRTLSKNDIAAAMSKTDMYDFLVDIVPREDT 81 8*****************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 3.86E-27 | 1 | 72 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 9.0E-37 | 1 | 78 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.5E-22 | 1 | 63 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
LPLARIKRIM KSDEDVRMVS AEAPVLLAKA CEMFIMELTM RAWGNVEENK RRTLSKNDIA 60 AAMSKTDMYD FLVDIVPRED TRGPQVFXGI PGTPIPXTLS QILPNNPVPP HNQHDAAGPQ 120 SGAPTMLMGV PLLDPTDPQQ LQDQPSPTPV LPKPEEENNP SPDSDD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 5e-42 | 1 | 78 | 18 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g25550.3 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017414263.1 | 1e-116 | PREDICTED: nuclear transcription factor Y subunit C-9-like isoform X1 | ||||
Swissprot | Q8L4B2 | 1e-44 | NFYC9_ARATH; Nuclear transcription factor Y subunit C-9 | ||||
TrEMBL | A0A0L9TTQ1 | 1e-115 | A0A0L9TTQ1_PHAAN; Uncharacterized protein | ||||
STRING | XP_007147755.1 | 5e-70 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08970.4 | 3e-46 | nuclear factor Y, subunit C9 |