PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g25540.9
Common NameLR48_Vigan02g009800
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 115aa    MW: 12573.5 Da    PI: 4.9099
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g25540.9genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.81.3e-085312955
             AP2 29 krfslgkfgtaeeAakaaiaarkkleg 55
                    +r +lg+f tae+Aa+a+++a+ +++g
  Vang06g25540.9  5 QRSWLGTFTTAEDAARAYDRAAYAMRG 31
                    567**********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.775139IPR001471AP2/ERF domain
SMARTSM003804.7E-7245IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-13341IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.8E-17341IPR001471AP2/ERF domain
PfamPF008471.1E-4531IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MKHGQRSWLG TFTTAEDAAR AYDRAAYAMR GPFAVLNFPD EYPPPAPTVP SSSSSSSSSS  60
SSSSSSSVST SSHGHVERRG RNEDENQVFE FEYFDDKLLE ELLGYDEDKS KHGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1829835114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g25540.9
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017412818.15e-78PREDICTED: ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC53e-22ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A0L9TTQ61e-76A0A0L9TTQ6_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SUU23e-77A0A0S3SUU2_PHAAN; Uncharacterized protein
STRINGGLYMA02G00890.17e-26(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04370.13e-13Ethylene-responsive element binding factor 14
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]