PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g25540.4 | ||||||||
Common Name | LR48_Vigan02g009800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 98aa MW: 11063 Da PI: 4.9099 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 27.2 | 9.4e-09 | 5 | 32 | 29 | 56 |
AP2 29 krfslgkfgtaeeAakaaiaarkklege 56 +r +lg+f tae+Aa+a+++a+ +++g+ Vang06g25540.4 5 QRSWLGTFTTAEDAARAYDRAAYAMRGP 32 567**********************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 13.775 | 1 | 39 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.7E-7 | 2 | 45 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-17 | 3 | 41 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.38E-13 | 3 | 41 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 7.8E-5 | 5 | 31 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 98 aa Download sequence Send to blast |
MKHGQRSWLG TFTTAEDAAR AYDRAAYAMR GPFAVLNFPD EYPPPSSSSS VSTSSHGHVE 60 RRGRNEDENQ VFEFEYFDDK LLEELLGYDE DKSKHGK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-20 | 2 | 81 | 35 | 114 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g25540.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 2e-84 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017412818.1 | 5e-45 | PREDICTED: ethylene-responsive transcription factor ERF096-like | ||||
Swissprot | Q9LTC5 | 2e-22 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A0L9TTQ6 | 1e-43 | A0A0L9TTQ6_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SUU2 | 6e-44 | A0A0S3SUU2_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA02G00890.1 | 1e-23 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04370.1 | 1e-15 | Ethylene-responsive element binding factor 14 |
Publications ? help Back to Top | |||
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