PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g24890.1
Common NameLR48_Vigan02g016400
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NF-YA
Protein Properties Length: 367aa    MW: 40057.3 Da    PI: 7.3248
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g24890.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA964.2e-30161217158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     d+p +VNaKQy++I++RRq+Rak+  e+kl +k rkpy+heSRh hA+rRpRg+gGrF
  Vang06g24890.1 161 DAPTFVNAKQYHGIIRRRQSRAKAVLENKL-IKRRKPYMHESRHLHAMRRPRGNGGRF 217
                     579***************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.8E-34159220IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.547160220IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.8E-22163185IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.5E-25163217IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.8E-22194217IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
LKMAMQTAYL KEHEGIVHNS VGQLSSGTSA PWWNGLGSQP VYGDYCGQNK PFSLEFSNYI  60
DPFAGGKQAV RGAEPVIDRG HATQFSIFPE ECKMLGDAQN PQPAIGLQPS LAEPTNNFDI  120
GFNQPMMCAP YPCMEQFCAI TAYGPQISGR IMLPHNMASD DAPTFVNAKQ YHGIIRRRQS  180
RAKAVLENKL IKRRKPYMHE SRHLHAMRRP RGNGGRFLNT RNSNNGNGGN DSEVNNMGGL  240
QFLSSASQSS EMLQSDVGIN SPMETDECSP NMSSTEVNSM FSREGFDGFS VNPLGSSVLP  300
LGSPVYPLGS SVHSLTNLVV LENFVLSDLG KPFLAKLRPF IPGSPHSAKA FHDMDVLYMV  360
MAMQST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-17161225266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175194RRRQSRAKAVLENKLIKRRK
2175195RRRQSRAKAVLENKLIKRRKP
3176195RRQSRAKAVLENKLIKRRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g24890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017412625.10.0PREDICTED: nuclear transcription factor Y subunit A-10
RefseqXP_017412627.10.0PREDICTED: nuclear transcription factor Y subunit A-10
RefseqXP_017412628.10.0PREDICTED: nuclear transcription factor Y subunit A-10
RefseqXP_017412629.10.0PREDICTED: nuclear transcription factor Y subunit A-10
RefseqXP_017412630.10.0PREDICTED: nuclear transcription factor Y subunit A-10
RefseqXP_017412631.10.0PREDICTED: nuclear transcription factor Y subunit A-10
TrEMBLA0A0L9TV310.0A0A0L9TV31_PHAAN; Uncharacterized protein
STRINGXP_007145780.11e-158(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37943464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.29e-44nuclear factor Y, subunit A10
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]