PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g24170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | G2-like | ||||||||
Protein Properties | Length: 610aa MW: 67318.6 Da PI: 6.6839 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 99.9 | 1.7e-31 | 252 | 306 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt+eLHe+Fve+v++LGG+ekAtPk+il+lm+ +gLt+ hvkSHLQkYR+ Vang06g24170.1 252 KTRIRWTQELHEKFVECVNRLGGAEKATPKAILRLMESDGLTIFHVKSHLQKYRI 306 68****************************************************7 PP | |||||||
2 | G2-like | 92.2 | 4.4e-29 | 484 | 535 | 4 | 55 |
G2-like 4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++Wt++LH++Fv av++LGG++kAtPk++l++m+ k+Lt+ hvkSHLQkYR+ Vang06g24170.1 484 IKWTKDLHQQFVAAVNNLGGAQKATPKAVLKMMNSKSLTIFHVKSHLQKYRS 535 79*************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.404 | 249 | 309 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-28 | 250 | 307 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.88E-17 | 250 | 306 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.3E-23 | 252 | 307 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.1E-8 | 256 | 305 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 8.033 | 477 | 538 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.24E-15 | 479 | 536 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.9E-26 | 480 | 536 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.0E-21 | 481 | 535 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.3E-7 | 485 | 534 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 610 aa Download sequence Send to blast |
MNEYRIDCVG RIQQSYGLNG DLSSEFGNCS SQCFDIIQAS HMGTCNQPLA MASGGFEEEP 60 HIGQTKSSSS IISRFESPAS AFYATEICMG FPQYDRLVGN PSLISQFSKI SDVEFPLYQS 120 PRQNLFLASL ANQPAPNFEL SNPLQAMLLS HVNSDQCVRS PEKSNKISSG NFPGSSFLPI 180 EQPKLFIGDA SSPSVPCIGN QDQRDCCGSY NLPAAQISFS SQQEMLSPTL SAGSLLTSSG 240 NSSSNGPVVS SKTRIRWTQE LHEKFVECVN RLGGAEKATP KAILRLMESD GLTIFHVKSH 300 LQKYRIAKYM PQSTQGKSEK RTNVENVHLD AKTCCDSNQL SFLFFIASGL QIREALQLQL 360 DELNGVHNSV ANVGGAENNS FNFQHHEQHL FDVPVSCLNF DSQNFLCQSS GDHSPPLFGS 420 VVDSFLFSDE DTFCETYNVY EHFRNEKNNI LEGGASAPVN GVEVVSATSG NSASSMVPTR 480 KKGIKWTKDL HQQFVAAVNN LGGAQKATPK AVLKMMNSKS LTIFHVKSHL QKYRSTMYVK 540 NTSREGHEES HGRDMVTELQ QKICMQIEES RKLQLEIGRG IQEQLELQRN LQMLVQEQKK 600 QVNDANKAN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-23 | 252 | 538 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-23 | 252 | 538 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 1e-23 | 252 | 538 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-23 | 252 | 538 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-23 | 252 | 538 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-23 | 252 | 538 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-23 | 252 | 538 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-23 | 252 | 538 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-23 | 252 | 538 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-23 | 252 | 538 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-23 | 252 | 538 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-23 | 252 | 538 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g24170.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007145673.1 | 0.0 | hypothetical protein PHAVU_007G258700g | ||||
TrEMBL | A0A4D6MX04 | 0.0 | A0A4D6MX04_VIGUN; Two-component response regulator ARR-B family | ||||
STRING | XP_007145673.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3740 | 34 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06800.2 | 7e-43 | G2-like family protein |