PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g24120.2
Common NameLR48_Vigan02g027600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bZIP
Protein Properties Length: 406aa    MW: 45018.9 Da    PI: 7.0188
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g24120.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1262e-08186206525
                     CHHHCHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKk 25 
                     k  rr+++NReAAr+sR+RKk
  Vang06g24120.2 186 KTLRRLAQNREAARKSRLRKK 206
                     7789****************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1709.4E-6177220No hitNo description
PfamPF077161.2E-4183206IPR004827Basic-leucine zipper domain
PROSITE patternPS000360189204IPR004827Basic-leucine zipper domain
PfamPF141441.1E-30240313IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MASSSVKSTN STTQLEPLPP HLHHQQPPHH FHHHQIPDQQ ISFGMMPSSS SHSIPANYLS  60
KDSGAYDLGE LDQAFFLYLD GQADPSSVQD QRQNSSSGMR PPPTLNIFPS QPMHAVPPPN  120
SKVSMELPST HTSGSKRPGS SITKPNPHTE LAPSAPEPPK AVKREGNRKG ATSSSEQEAP  180
KTPDPKTLRR LAQNREAARK SRLRKKGILM GGNALLGGEQ EAAMFDVEYA RWLEEHQRLV  240
CELRGAVQEH LHENELRLYV DSCLAHYDQV MNLKSIVAKT DVFHLVFGMW KTPAERCFMW  300
IGGFRPSELI KIILGQIEPL TEQQILGICG LQQSTQEAEE ALSQGLDALN QSLSDTLTSD  360
SLWCPPNMTN YMGQMAVAMN KLSTLESFAR QVHIYESCLR KITTY*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g24120.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-159AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017412670.10.0PREDICTED: transcription factor HBP-1b(c38)
SwissprotQ52MZ21e-176TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLA0A0L9TUE70.0A0A0L9TUE7_PHAAN; Uncharacterized protein
STRINGXP_007145659.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.31e-128bZIP family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]