PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g24120.2 | ||||||||
Common Name | LR48_Vigan02g027600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bZIP | ||||||||
Protein Properties | Length: 406aa MW: 45018.9 Da PI: 7.0188 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 26 | 2e-08 | 186 | 206 | 5 | 25 |
CHHHCHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKk 25 k rr+++NReAAr+sR+RKk Vang06g24120.2 186 KTLRRLAQNREAARKSRLRKK 206 7789****************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 9.4E-6 | 177 | 220 | No hit | No description |
Pfam | PF07716 | 1.2E-4 | 183 | 206 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 189 | 204 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 1.1E-30 | 240 | 313 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 406 aa Download sequence Send to blast |
MASSSVKSTN STTQLEPLPP HLHHQQPPHH FHHHQIPDQQ ISFGMMPSSS SHSIPANYLS 60 KDSGAYDLGE LDQAFFLYLD GQADPSSVQD QRQNSSSGMR PPPTLNIFPS QPMHAVPPPN 120 SKVSMELPST HTSGSKRPGS SITKPNPHTE LAPSAPEPPK AVKREGNRKG ATSSSEQEAP 180 KTPDPKTLRR LAQNREAARK SRLRKKGILM GGNALLGGEQ EAAMFDVEYA RWLEEHQRLV 240 CELRGAVQEH LHENELRLYV DSCLAHYDQV MNLKSIVAKT DVFHLVFGMW KTPAERCFMW 300 IGGFRPSELI KIILGQIEPL TEQQILGICG LQQSTQEAEE ALSQGLDALN QSLSDTLTSD 360 SLWCPPNMTN YMGQMAVAMN KLSTLESFAR QVHIYESCLR KITTY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g24120.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 1e-159 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017412670.1 | 0.0 | PREDICTED: transcription factor HBP-1b(c38) | ||||
Swissprot | Q52MZ2 | 1e-176 | TGA10_TOBAC; bZIP transcription factor TGA10 | ||||
TrEMBL | A0A0L9TUE7 | 0.0 | A0A0L9TUE7_PHAAN; Uncharacterized protein | ||||
STRING | XP_007145659.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06839.3 | 1e-128 | bZIP family protein |
Publications ? help Back to Top | |||
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