PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang06g23630.1

Common Name

LR48_Vigan02g040200

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

bZIP

Protein Properties

Length: 292aa MW: 32891.4 Da PI: 4.7743

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang06g23630.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.9	3.3e-11	129	173	1	45
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 e+ +k+ +r +NR AA rsR+RKka+++ Le k+ Le+e ++L Vang06g23630.1 129 EPTSKKLKRQLRNRDAAVRSRERKKAYVKDLEMKSRYLEGECRRL 173 6789************************************98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.7E-11	125	191	No hit	No description
SMART	SM00338	7.2E-5	129	193	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.9E-9	130	173	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.634	131	173	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.63E-10	133	189	No hit	No description
CDD	cd14704	2.14E-14	134	184	No hit	No description
PROSITE pattern	PS00036	0	136	151	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0030968	Biological Process	endoplasmic reticulum unfolded protein response
GO:0005634	Cellular Component	nucleus
GO:0005789	Cellular Component	endoplasmic reticulum membrane
GO:0016021	Cellular Component	integral component of membrane
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
LGIQFLISMD TSEETLLTQF DWDSFFDQVP EFDAHDFLQD DTAPVSVAGD NPSPNDPVLS 60 QIENMLMGHP ENDVVSTETP LSESSESDFY RLLEEILVEP DEGPESERSK AESEEGSEKD 120 RTGDAVSDEP TSKKLKRQLR NRDAAVRSRE RKKAYVKDLE MKSRYLEGEC RRLGHLLQCC 180 YAENNALRLC LQSRGAYGVS VTSQESAVLL LEPLLLGSLL WVMGIMCHLS LPLMLCLTAV 240 LPRENIVQKG VIKVTQKGPE SNISRCFQMQ SFVKSRRCRA SRTKMKFIFM L*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00019	PBM	Transfer from AT1G42990	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang06g23630.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017412566.1	0.0	PREDICTED: bZIP transcription factor 60
TrEMBL	A0A0L9TV20	0.0	A0A0L9TV20_PHAAN; Uncharacterized protein
STRING	XP_007145545.1	1e-173	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12009	30	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G42990.1	1e-17	basic region/leucine zipper motif 60

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]