PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g23410.1
Common NameLR48_Vigan02g042900
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 246aa    MW: 27720.4 Da    PI: 9.145
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g23410.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.4e-0582104123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ C+k F+++  L  H++ H
  Vang06g23410.1  82 FSCKFCNKKFPSSQALGGHQNAH 104
                     89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.2E-571108IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.02E-679109No hitNo description
PfamPF139126.4E-682106IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.28182109IPR007087Zinc finger, C2H2
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MADEFFVRGD ERRKLKRKME ETSSPEVVDS ELLLSMSLGN NQMVGESSSM PICNSLKNPV  60
DSSPKLIENP NHQLIVPKQR QFSCKFCNKK FPSSQALGGH QNAHRRERVL SRIDREFDMG  120
TFGLGVHMYP YSTMAHQHPF RAPIPFFYET NMHPMTQMST MPWPFVPSYG NQGLHNTSTS  180
GQRFGMANLG GLNVEAPQNV YHRGLGFGFE HNQAHPFDPT NAATMPRPSL SGLMRNQYNI  240
GNQPF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11117RRKLKRK
21118RRKLKRKM
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g23410.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017412887.10.0PREDICTED: uncharacterized protein LOC108324450
TrEMBLA0A0L9TVR70.0A0A0L9TVR7_PHAAN; Uncharacterized protein
STRINGXP_007145517.11e-129(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF142291217
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25160.18e-14zinc finger protein 3
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]