PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g23360.1 | ||||||||
Common Name | LR48_Vigan02g044500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | G2-like | ||||||||
Protein Properties | Length: 209aa MW: 22935.2 Da PI: 9.82 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 97.6 | 9e-31 | 44 | 97 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl Vang06g23360.1 44 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 97 59*******************.********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.43E-20 | 41 | 101 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.059 | 41 | 100 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-31 | 43 | 102 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.7E-24 | 45 | 97 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.2E-8 | 47 | 96 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MPLSQTLISP HLAVAFDITN SSHHQFPLQP PSAAEDEPAR TLKRPRLVWT PQLHKRFVDA 60 VAHLGIKNAV PKTIMQLMSV DGLTRENVAS HLQKYRLYLK RMQGLAGGSA ADSATDHLFA 120 SSPVPPHFLH PATRPASDHY LPFVPGLQQH RNHHHHQHMA VPAHFGSPRN AHFELPVLSR 180 MGASVPGYVE DVESGGRKVL TLFPAGDD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 2e-33 | 44 | 100 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g23360.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017413418.1 | 1e-151 | PREDICTED: transcription factor PCL1-like | ||||
Swissprot | O22210 | 2e-51 | MYBC1_ARATH; Transcription factor MYBC1 | ||||
TrEMBL | A0A0L9TUQ8 | 1e-149 | A0A0L9TUQ8_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SU30 | 1e-149 | A0A0S3SU30_PHAAN; Uncharacterized protein | ||||
STRING | XP_007145504.1 | 1e-124 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8542 | 30 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05090.1 | 4e-68 | G2-like family protein |
Publications ? help Back to Top | |||
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