PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g23190.1
Common NameLR48_Vigan02g046200
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 226aa    MW: 25091.4 Da    PI: 6.9493
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g23190.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.51e-1256102354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     r+h+e+E+rRR+riN  +++Lr+llP +      K +Ka+ L k+ve +k+L
  Vang06g23190.1  56 RNHKEAEKRRRERINAHLNKLRTLLPCN-----SKTDKASLLAKVVERLKEL 102
                     58*************************8.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.6553102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-1056102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.74E-1256105No hitNo description
Gene3DG3DSA:4.10.280.101.2E-1357111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-1457114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-1059108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2602.0E-4143206No hitNo description
CDDcd048731.53E-4143191No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MDNSDLFQFL SNTNDSFFPE PASSTMQQSF SASFSSYPLE PFHAPPLQDK ALAALRNHKE  60
AEKRRRERIN AHLNKLRTLL PCNSKTDKAS LLAKVVERLK ELKQQMSEIT QCETFPSETD  120
EISVLSTSGD ESGDDGRVIF KASLCCEDRS DLIPDLVEIL KSLHLTTLKA EIATLGGRTR  180
NVLVVATDKD HGVESIHFLH SSLNALLEHN GTSKRRRVVG PKFIA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213217KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g23190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017412890.11e-165PREDICTED: transcription factor bHLH106-like
SwissprotQ9LET04e-71BH107_ARATH; Putative transcription factor bHLH107
TrEMBLA0A0L9TV681e-164A0A0L9TV68_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SU091e-164A0A0S3SU09_PHAAN; Uncharacterized protein
STRINGXP_007145485.11e-126(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66723249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.12e-73bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]