PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g23100.2 | ||||||||
Common Name | LR48_Vigan02g048400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 136aa MW: 15234.3 Da PI: 10.2529 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.2 | 9.7e-19 | 41 | 91 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp+ +r++lg+f+++ +Aaka++ a+ k++g Vang06g23100.2 41 RYRGVRRRP-WGKFAAEIRDPTRK--GTRVWLGTFDSEIDAAKAYDCAAFKMRG 91 8********.**********8542..4**********99*************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.12E-28 | 40 | 99 | No hit | No description |
SMART | SM00380 | 4.6E-35 | 41 | 105 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-13 | 41 | 91 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.316 | 41 | 99 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-31 | 41 | 100 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.49E-23 | 41 | 101 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.1E-13 | 42 | 53 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-13 | 81 | 101 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:1902074 | Biological Process | response to salt | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 136 aa Download sequence Send to blast |
MNSTSTSTIS IPLNKCNSPE PLASSESQEK AKKAEYDVGK RYRGVRRRPW GKFAAEIRDP 60 TRKGTRVWLG TFDSEIDAAK AYDCAAFKMR GQKAILNFPL EAGEYDPKPN TCGRKRRRES 120 LQLELPQVHL HHGVS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-29 | 39 | 100 | 3 | 64 | ATERF1 |
3gcc_A | 7e-29 | 39 | 100 | 3 | 64 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 113 | 117 | RKRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g23100.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017413756.1 | 1e-98 | PREDICTED: ethylene-responsive transcription factor ERF107-like | ||||
Swissprot | Q9LY05 | 7e-41 | EF106_ARATH; Ethylene-responsive transcription factor ERF106 | ||||
TrEMBL | A0A0L9TVX3 | 2e-97 | A0A0L9TVX3_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3STW2 | 2e-97 | A0A0S3STW2_PHAAN; Uncharacterized protein | ||||
STRING | XP_007145470.1 | 2e-79 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07580.1 | 1e-42 | ERF family protein |
Publications ? help Back to Top | |||
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