PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g23010.5 | ||||||||
Common Name | LR48_Vigan02g048600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 180aa MW: 19955.5 Da PI: 8.0634 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.8 | 8.9e-21 | 41 | 91 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + k r++lg+f+ta eAaka+++a+ +++g Vang06g23010.5 41 HYRGVRRRP-WGKFAAEIRDP---NrKGSRVWLGTFDTAIEAAKAYDRAAFRMRG 91 8********.**********9...6566*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.00E-32 | 40 | 99 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.5E-33 | 40 | 100 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.5E-39 | 41 | 105 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-23 | 41 | 101 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.2E-15 | 41 | 91 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.408 | 41 | 99 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.8E-14 | 42 | 53 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.8E-14 | 81 | 101 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MPHHMETTSS TTATTLGSTV YDSSNQVSSL DDGNNSREDK HYRGVRRRPW GKFAAEIRDP 60 NRKGSRVWLG TFDTAIEAAK AYDRAAFRMR GSKAILNFPL EVGESEEESV SIKVGLKRER 120 EEESEGKKES NKLVKKEECS PKGVCPLTPS CWKGFWDTDV MGTIFSVPPL SPLSPLMVV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-32 | 40 | 106 | 4 | 70 | ATERF1 |
3gcc_A | 1e-32 | 40 | 106 | 4 | 70 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 126 | 135 | KKESNKLVKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00556 | DAP | Transfer from AT5G51190 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g23010.5 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and in leaves. Also strongly induced by cycloheximide, mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017413332.1 | 1e-131 | PREDICTED: ethylene-responsive transcription factor ERF105 | ||||
Swissprot | Q40478 | 4e-56 | ERF5_TOBAC; Ethylene-responsive transcription factor 5 | ||||
TrEMBL | A0A0L9TV10 | 1e-130 | A0A0L9TV10_PHAAN; Uncharacterized protein | ||||
STRING | XP_007145468.1 | 2e-99 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51190.1 | 5e-42 | ERF family protein |
Publications ? help Back to Top | |||
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