PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang06g23010.2

Common Name

LR48_Vigan02g048600

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

ERF

Protein Properties

Length: 231aa MW: 25521.9 Da PI: 9.4892

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang06g23010.2	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	65.1	1.4e-20	92	142	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + k r++lg+f+ta eAaka+++a+ +++g Vang06g23010.2 92 HYRGVRRRP-WGKFAAEIRDP---NrKGSRVWLGTFDTAIEAAKAYDRAAFRMRG 142 8******.******9...6566***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	7.4E-33	91	151	IPR001471	AP2/ERF domain
CDD	cd00018	8.71E-33	91	150	No hit	No description
SMART	SM00380	9.5E-39	92	156	IPR001471	AP2/ERF domain
Pfam	PF00847	5.1E-15	92	142	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.33E-23	92	152	IPR016177	DNA-binding domain
PROSITE profile	PS51032	24.408	92	150	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.4E-13	93	104	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.4E-13	132	152	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
LLPQDLQFQV HTTPQMPQLT SSSKPPRSSN LSNRKPSLKN ITIPSITSGL VMPHHMETTS 60 STTATTLGST VYDSSNQVSS LDDGNNSRED KHYRGVRRRP WGKFAAEIRD PNRKGSRVWL 120 GTFDTAIEAA KAYDRAAFRM RGSKAILNFP LEVGESEEES VSIKVGLKRE REEESEGKKE 180 SNKLVKKEEC SPKGVCPLTP SCWKGFWDTD VMGTIFSVPP LSPLSPLMVV *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	8e-33	91	157	4	70	ATERF1
3gcc_A	8e-33	91	157	4	70	ATERF1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	177	186	KKESNKLVKK

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269\|PubMed:10652129, ECO:0000269\|PubMed:10792818, ECO:0000269\|PubMed:7756828, ECO:0000269\|Ref.2}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00556	DAP	Transfer from AT5G51190	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang06g23010.2

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and in leaves. Also strongly induced by cycloheximide, mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269\|PubMed:10652129, ECO:0000269\|PubMed:12090623, ECO:0000269\|PubMed:7756828, ECO:0000269\|Ref.2}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017413332.1	1e-170	PREDICTED: ethylene-responsive transcription factor ERF105
Swissprot	Q40478	1e-57	ERF5_TOBAC; Ethylene-responsive transcription factor 5
TrEMBL	A0A0L9TV10	1e-169	A0A0L9TV10_PHAAN; Uncharacterized protein
STRING	XP_007145468.1	1e-129	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51190.1	4e-42	ERF family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]