PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g22890.3
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family AP2
Protein Properties Length: 300aa    MW: 33232.2 Da    PI: 8.1467
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g22890.3genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP223.81.1e-0728601855
             AP2 18 eIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    e+rd      + k+++lg f+ta+ Aa+a+++a+ k++g
  Vang06g22890.3 28 ECRD------CgKQVYLGGFDTAQAAARAYDRAAIKFRG 60
                    6778......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.838168IPR001471AP2/ERF domain
SMARTSM003804.5E-112874IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-93169IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.8E-123368IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MKAVILNIVP AVMNCLVVWT NIIEYLLECR DCGKQVYLGG FDTAQAAARA YDRAAIKFRG  60
IDADINFSLR DYEEDLKQVL NEKHGRPSVL FEFSVSLIHD LIELQMRGLS KEEFVLVLRR  120
QINGISRRNA TYKSALALHK GGQGEPSMGP FLSKTFYPKS SINYDEEKVE SSFRAFSYKE  180
KIIGNSSIAG TCHDLDLRLG ISPCSKKLKN CDYGGDYSFG CVTCKIPQEI GTMCEEKSMV  240
ERMRSVPLQK FCSNGSIGSR ALQSNAASSG FVTYQLCQHN SSLTLQGCGV TLVDQIKPL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g22890.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-179AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017412767.11e-162PREDICTED: AP2-like ethylene-responsive transcription factor TOE3
RefseqXP_017412768.11e-162PREDICTED: AP2-like ethylene-responsive transcription factor TOE3
TrEMBLA0A1S3V8Z91e-144A0A1S3V8Z9_VIGRR; AP2-like ethylene-responsive transcription factor TOE3
STRINGXP_007145449.11e-105(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.23e-33related to AP2.7