PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g22890.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family AP2
Protein Properties Length: 439aa    MW: 48696.8 Da    PI: 8.7119
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g22890.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2331.5e-10152226155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..................kr...krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+  +  ++                  ++   k+++lg f+ta+ Aa+a+++a+ k++g
  Vang06g22890.1 152 SQYRGVTFYRRTGRWESHICYnC--GNyvvaetqksldiaapigcRKdcgKQVYLGGFDTAQAAARAYDRAAIKFRG 226
                     78****************86633..3346666778999999998622678************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-7152226IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-10152235IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-14153234IPR001471AP2/ERF domain
PROSITE profilePS5103215.909153234IPR001471AP2/ERF domain
SMARTSM003806.2E-24153240IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MAMFDLNVDI NHADADSGSS CAQKEAKLQS FPTEISDSRT SNSSVWNPAD EDSSNNSSPL  60
IFDILKKERG GSEFNMERNM AQKGEMATRT LFPVTSSDKG GRVPDFKSGL WGNTQLLKPS  120
FPESDEQNEL RTLQQKLPHV RKNRRGPRSR SSQYRGVTFY RRTGRWESHI CYNCGNYVVA  180
ETQKSLDIAA PIGCRKDCGK QVYLGGFDTA QAAARAYDRA AIKFRGIDAD INFSLRDYEE  240
DLKQMRGLSK EEFVLVLRRQ INGISRRNAT YKSALALHKG GQGEPSMGPF LSKTFYPKSS  300
INYDEEKVES SFRAFSYKEK IIGNSSIAGT CHDLDLRLGI SPCSKKLKNC DYGGDYSFGC  360
VTCKIPQEIG TMCEEKSMVE RMRSVPLQKF CSNGSIGSRA LQSNAASSGF VTYQLCQHNS  420
SLTLQGCGVT LVDQIKPL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g22890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017412767.10.0PREDICTED: AP2-like ethylene-responsive transcription factor TOE3
RefseqXP_017412768.10.0PREDICTED: AP2-like ethylene-responsive transcription factor TOE3
TrEMBLA0A1S3V8Z90.0A0A1S3V8Z9_VIGRR; AP2-like ethylene-responsive transcription factor TOE3
STRINGXP_007145449.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15652911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.21e-51related to AP2.7