PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g22360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 298aa MW: 32908.7 Da PI: 8.9058 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.9 | 0.00033 | 184 | 206 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg Fs+ L+ H ++ H Vang06g22360.1 184 QCPQCGAKFSSVTALVDHVQKvH 206 7******************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1110.10 | 3.8E-10 | 55 | 118 | IPR000058 | Zinc finger, AN1-type |
SuperFamily | SSF118310 | 5.69E-9 | 57 | 110 | No hit | No description |
PROSITE profile | PS51039 | 8.022 | 62 | 109 | IPR000058 | Zinc finger, AN1-type |
Pfam | PF01428 | 5.1E-8 | 65 | 104 | IPR000058 | Zinc finger, AN1-type |
PROSITE profile | PS50157 | 9.411 | 183 | 211 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0034 | 183 | 206 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13894 | 1.9E-4 | 184 | 206 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 185 | 206 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
LEHRGYIKHQ CPKADKQDVT VVVCPLCAKG VRLVPDQDAN ITWENHVNTD CDPSNYEKVT 60 KKKKCPVPGC REILGFSNTI KCRDCMVDHC LKHRFGPDHK CPGPRKMETS FSFRNLLNVS 120 KKQESKPQPS SSASSRWSTG FLNAVSNIRS SAEAGVSKLS EANQGWWKAS GGVGASQSSG 180 QVEQCPQCGA KFSSVTALVD HVQKVHERSG NRSGPKVAID ACPKCSRGFQ DPVALVEHVV 240 LLMELKEEGM KYRREITQKI LEFLSPEISI YMNLCFIFVK GTWTENSKIN PVALATK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in environmental stress response. {ECO:0000250}. | |||||
UniProt | May be involved in environmental stress response. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00306 | DAP | Transfer from AT2G41835 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g22360.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017412667.1 | 1e-177 | PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like | ||||
Swissprot | Q0D5B9 | 2e-92 | SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 | ||||
Swissprot | Q8VZ42 | 8e-93 | SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11 | ||||
TrEMBL | A0A0L9TVJ8 | 1e-175 | A0A0L9TVJ8_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SUC2 | 1e-175 | A0A0S3SUC2_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA02G31550.2 | 1e-144 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5864 | 33 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41835.1 | 9e-87 | C2H2 family protein |
Publications ? help Back to Top | |||
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