PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g22170.2
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MIKC_MADS
Protein Properties Length: 248aa    MW: 28317.5 Da    PI: 5.5106
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g22170.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.52e-29959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ien   rqvtfskRrng+lKKA ELSvLCdaevaviifsstgklye+s+
  Vang06g22170.2  9 KKIENLNSRQVTFSKRRNGLLKKARELSVLCDAEVAVIIFSSTGKLYEFSN 59
                    68***********************************************95 PP
2K-box61.53.4e-21841759100
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     ++ ++   ++ + + L +ei +L++   +++G++L+ LslkeLq+Le+qL +++  ++++K+++l+eq+ +++ +e+++  en+ Lrk+lee
  Vang06g22170.2  84 VSPKDVTVMEPDTDLLMDEITKLRSAYSNMKGKELDGLSLKELQHLEKQLSEGILAVKDRKEQVLVEQLTRSRIQEQKAMLENEVLRKQLEE 175
                     555666778889999**************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.1E-42160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.969161IPR002100Transcription factor, MADS-box
CDDcd002652.31E-44276No hitNo description
SuperFamilySSF554556.54E-33277IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-30323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-303859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.75189179IPR002487Transcription factor, K-box
PfamPF014861.0E-1492173IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009910Biological Processnegative regulation of flower development
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MGRGKIEIKK IENLNSRQVT FSKRRNGLLK KARELSVLCD AEVAVIIFSS TGKLYEFSNT  60
SMEHTLSRYM KGTELDSAEQ PIDVSPKDVT VMEPDTDLLM DEITKLRSAY SNMKGKELDG  120
LSLKELQHLE KQLSEGILAV KDRKEQVLVE QLTRSRIQEQ KAMLENEVLR KQLEEIQNKT  180
KTQFLEFSCL DRTFSKNSSK SLFNCASEEN GHSDTSLQLG YVIMTPFVLI ETYLETEICC  240
TTWIWTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-20184184MEF2C
5f28_B1e-20184184MEF2C
5f28_C1e-20184184MEF2C
5f28_D1e-20184184MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g22170.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-128AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022641035.11e-171MADS-box transcription factor 23 isoform X1
SwissprotQ392954e-62AGL15_BRANA; Agamous-like MADS-box protein AGL15
TrEMBLA0A3Q0FAD01e-169A0A3Q0FAD0_VIGRR; MADS-box transcription factor 23 isoform X1
STRINGXP_007145592.11e-143(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.16e-63AGAMOUS-like 15