PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g22170.1
Common NameLR48_Vigan02g033900
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MIKC_MADS
Protein Properties Length: 249aa    MW: 28123.9 Da    PI: 6.9305
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g22170.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.52e-29959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ien   rqvtfskRrng+lKKA ELSvLCdaevaviifsstgklye+s+
  Vang06g22170.1  9 KKIENLNSRQVTFSKRRNGLLKKARELSVLCDAEVAVIIFSSTGKLYEFSN 59
                    68***********************************************95 PP
2K-box61.43.5e-21841759100
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     ++ ++   ++ + + L +ei +L++   +++G++L+ LslkeLq+Le+qL +++  ++++K+++l+eq+ +++ +e+++  en+ Lrk+lee
  Vang06g22170.1  84 VSPKDVTVMEPDTDLLMDEITKLRSAYSNMKGKELDGLSLKELQHLEKQLSEGILAVKDRKEQVLVEQLTRSRIQEQKAMLENEVLRKQLEE 175
                     555666778889999**************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.1E-42160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.969161IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.67E-33277IPR002100Transcription factor, MADS-box
CDDcd002657.19E-44276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-30323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-303859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.75189179IPR002487Transcription factor, K-box
PfamPF014861.1E-1492173IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009910Biological Processnegative regulation of flower development
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MGRGKIEIKK IENLNSRQVT FSKRRNGLLK KARELSVLCD AEVAVIIFSS TGKLYEFSNT  60
SMEHTLSRYM KGTELDSAEQ PIDVSPKDVT VMEPDTDLLM DEITKLRSAY SNMKGKELDG  120
LSLKELQHLE KQLSEGILAV KDRKEQVLVE QLTRSRIQEQ KAMLENEVLR KQLEEIQNKT  180
KTQFLEFSCL DRTFSKNSSK SLFNCASEEN GHSDTSLQLG LSTPDYGHQR KGWKIEPCND  240
SGSQVASQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-21174174MEF2C
5f28_B7e-21174174MEF2C
5f28_C7e-21174174MEF2C
5f28_D7e-21174174MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Prevents premature flowering. Downstream regulator of a subset of the MIKC* MADS-controlled genes required during pollen maturation. {ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:18034896, ECO:0000269|PubMed:18799658}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g22170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150412e-96AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017414059.10.0PREDICTED: agamous-like MADS-box protein AGL18 isoform X1
SwissprotQ9M2K81e-68AGL18_ARATH; Agamous-like MADS-box protein AGL18
TrEMBLA0A0L9TVI10.0A0A0L9TVI1_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SU950.0A0A0S3SU95_PHAAN; Uncharacterized protein
STRINGXP_007145592.11e-159(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35823260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.15e-71AGAMOUS-like 18
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]