PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g20090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | Trihelix | ||||||||
Protein Properties | Length: 529aa MW: 58027.2 Da PI: 6.7813 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 59.2 | 1e-18 | 102 | 188 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +L+ea++e+ ++l+rg+l++ +Weev+ ++ r + ++s +qCk+k +nl+kryk ++++++++ + s+s++p+f+qle Vang06g20090.1 102 EWSDTAIVCLLEAYTEKFTQLNRGNLRGRDWEEVAFVVseRCENQSKSVEQCKNKVDNLKKRYKLERQRMSSG-CISTSHWPWFKQLE 188 5*************************************666677899*************************9.99999********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.0E-19 | 100 | 190 | No hit | No description |
Gene3D | G3DSA:3.40.1160.10 | 6.9E-57 | 238 | 304 | IPR001048 | Aspartate/glutamate/uridylate kinase |
SuperFamily | SSF53633 | 2.33E-48 | 241 | 299 | IPR001048 | Aspartate/glutamate/uridylate kinase |
CDD | cd04254 | 7.61E-103 | 243 | 522 | No hit | No description |
Pfam | PF00696 | 2.9E-19 | 244 | 501 | IPR001048 | Aspartate/glutamate/uridylate kinase |
SuperFamily | SSF53633 | 2.33E-48 | 338 | 521 | IPR001048 | Aspartate/glutamate/uridylate kinase |
Gene3D | G3DSA:3.40.1160.10 | 6.9E-57 | 342 | 521 | IPR001048 | Aspartate/glutamate/uridylate kinase |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046939 | Biological Process | nucleotide phosphorylation | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0016740 | Molecular Function | transferase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 529 aa Download sequence Send to blast |
MASCDDDDDF SLLRDDNHHL HQPYAPHHHF SPSAVAVAPV PPKSVADDAD DYGNPFDDDG 60 GSEKRKDREE IGEGATSYGF NKRSKAPQSS AGSAEYRKDR EEWSDTAIVC LLEAYTEKFT 120 QLNRGNLRGR DWEEVAFVVS ERCENQSKSV EQCKNKVDNL KKRYKLERQR MSSGCISTSH 180 WPWFKQLEQI VGNSLPAKFS DEDKAVVSAG TSPRQSKRYG VATPSTGQVN NIRSKALTNL 240 RWRRVVFKIS GAALTGSDTC NMDPKVAMLV SREVAIASRL GVEVAIVVGG CNFFSGDAWV 300 NATGLERCTA YQVGEHPLPR SQGYKDILLR SGKYLLDALH MGSAYHFVAF SMMATVMNSI 360 LLQSTLEKMG VQTRVQTSIA MQEFAELYNR QRAIRHLEKG RVIIFGGISF GAGNPLFSTD 420 IAAALRASEP SAYISFNLAV NAEAVLKGTN VDGVYDCNSR DNNFTFEHIS FRELGSRGIT 480 SMDASALTLC KENAIPVVVF NLLEPGNISK ALCGEQVGTL IDQTGAVS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ek5_A | 3e-50 | 234 | 521 | 1 | 239 | Uridylate kinase |
3ek5_B | 3e-50 | 234 | 521 | 1 | 239 | Uridylate kinase |
3ek5_C | 3e-50 | 234 | 521 | 1 | 239 | Uridylate kinase |
3ek5_D | 3e-50 | 234 | 521 | 1 | 239 | Uridylate kinase |
3ek5_E | 3e-50 | 234 | 521 | 1 | 239 | Uridylate kinase |
3ek5_F | 3e-50 | 234 | 521 | 1 | 239 | Uridylate kinase |
3ek6_A | 3e-50 | 234 | 521 | 1 | 239 | Uridylate kinase |
3ek6_B | 3e-50 | 234 | 521 | 1 | 239 | Uridylate kinase |
3ek6_C | 3e-50 | 234 | 521 | 1 | 239 | Uridylate kinase |
3ek6_D | 3e-50 | 234 | 521 | 1 | 239 | Uridylate kinase |
3ek6_E | 3e-50 | 234 | 521 | 1 | 239 | Uridylate kinase |
3ek6_F | 3e-50 | 234 | 521 | 1 | 239 | Uridylate kinase |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00340 | DAP | Transfer from AT3G10030 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g20090.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017414656.1 | 0.0 | PREDICTED: uridylate kinase | ||||
TrEMBL | A0A0L9TVN7 | 0.0 | A0A0L9TVN7_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3ST68 | 0.0 | A0A0S3ST68_PHAAN; Uncharacterized protein | ||||
STRING | XP_007145266.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4062 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10030.1 | 0.0 | Trihelix family protein |