PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g19700.1
Common NameLR48_Vigan02g080400
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Trihelix
Protein Properties Length: 426aa    MW: 48917.7 Da    PI: 5.9835
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g19700.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix91.77.7e-2934118287
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     W++qe+l+L+e+r++++ ++++++ k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+k+g+ +r+  + +++++f+qlea
  Vang06g19700.1  34 WPRQETLTLLEIRSRLDPKFKEANHKGPLWDEVSRIMsEEHGYQRSGKKCREKFENLYKYYKKTKDGKAGRH--DGKHYRFFRQLEA 118
                     *************************************999*****************************985..5557*******85 PP
2trihelix45.81.6e-14262344182
        trihelix   1 rWtkqevlaLiearremeerlrrgk.lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyf 82 
                     rW+++e+  L ++r e+e+r+  ++ +++  We v+ km+  g+ers+ +Ckekwe+++++ ++  e e++++ +e++++  +f
  Vang06g19700.1 262 RWPESEITRLQQLRAEIETRFPCSEiSEEVSWEVVATKMACFGYERSALMCKEKWESISNYPRE-GEKEGSKKcKENTRNSFFF 344
                     8*********************876599******************************986655.4444444404444444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.53093IPR001005SANT/Myb domain
PROSITE profilePS500906.7253491IPR017877Myb-like domain
PfamPF138374.4E-2034119No hitNo description
CDDcd122035.62E-203498No hitNo description
SMARTSM007170.52259322IPR001005SANT/Myb domain
PfamPF138372.7E-8261331No hitNo description
PROSITE profilePS500906.226262320IPR017877Myb-like domain
CDDcd122034.39E-16262325No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MPPHPTAELF PGHRNLTPLP TPQQQQQHYE VMIWPRQETL TLLEIRSRLD PKFKEANHKG  60
PLWDEVSRIM SEEHGYQRSG KKCREKFENL YKYYKKTKDG KAGRHDGKHY RFFRQLEALY  120
GENSSTVSVP ETNVVGSIHF QASSHDPSQT NQDKFQSHNS KHCDSLSLTN STNFDTTSSD  180
DDNDHHSMEN ESIEKRRKRN TRDAALMEAL QKLTGREIMK PETPNDGINV TAAEVQNHSE  240
NQNNEDESEI LNSCNVIRGG DRWPESEITR LQQLRAEIET RFPCSEISEE VSWEVVATKM  300
ACFGYERSAL MCKEKWESIS NYPREGEKEG SKKCKENTRN SFFFKNNDDH RQSSLYDQGS  360
AYCDDISDQG KEIERLQTNN SSSPSKCNAG NVDPSDSCFP FLMSSEGGNL WENYGLKLNK  420
ENQNH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g19700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017413926.11e-160PREDICTED: trihelix transcription factor PTL-like
TrEMBLA0A0L9TWU61e-159A0A0L9TWU6_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SSZ71e-158A0A0S3SSZ7_PHAAN; Uncharacterized protein
TrEMBLA0A151U3D41e-159A0A151U3D4_CAJCA; Uncharacterized protein
STRINGXP_007145244.11e-141(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20223489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.11e-54Trihelix family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]