PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g19270.2 | ||||||||
Common Name | LR48_Vigan02g081500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 194aa MW: 21570.2 Da PI: 7.576 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 43 | 1.1e-13 | 17 | 67 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + ykGVr++ +g+Wv+ +r p n+k++r++lg+f +++Aa a++ a+++++g Vang06g19270.2 17 PVYKGVRQR--NGKWVSKLRQP--NNKNARVWLGTFARPDMAAVAYDVAALAFKG 67 68****975..6******9998..4478**********************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.1E-8 | 17 | 67 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-23 | 18 | 81 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.17E-17 | 18 | 76 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 18.966 | 18 | 75 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-25 | 18 | 76 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-6 | 19 | 30 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.82E-23 | 19 | 77 | No hit | No description |
PRINTS | PR00367 | 1.1E-6 | 57 | 77 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MQKRKPGRKK FHETRHPVYK GVRQRNGKWV SKLRQPNNKN ARVWLGTFAR PDMAAVAYDV 60 AALAFKGDNA SLNFPDAISS LPHLNSATSS VKAIQIAATE AAEKHFSCAE FQKLGDYLSS 120 EGGSGSFSWD EDCSELLSEE SSRKFFWDEE EVFNTPELLN SMAEALIITP PALQKGFNWV 180 GGETTVDLTL WRN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g19270.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017412974.1 | 1e-141 | PREDICTED: ethylene-responsive transcription factor ERF024-like | ||||
TrEMBL | A0A0L9TVT1 | 1e-142 | A0A0L9TVT1_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SSY5 | 1e-142 | A0A0S3SSY5_PHAAN; Uncharacterized protein | ||||
STRING | XP_007145241.1 | 1e-110 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF243 | 33 | 224 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25470.1 | 2e-31 | C-repeat/DRE binding factor 2 |
Publications ? help Back to Top | |||
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