PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g19130.1 | ||||||||
Common Name | LR48_Vigan02g103600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 300aa MW: 33614.2 Da PI: 5.0156 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.1 | 5.2e-19 | 74 | 122 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a+++ ++k++g Vang06g19130.1 74 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARKIRG 122 9*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.775 | 73 | 130 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.35E-22 | 73 | 131 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.1E-38 | 73 | 136 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.0E-32 | 73 | 131 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.0E-12 | 74 | 122 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.03E-32 | 74 | 131 | No hit | No description |
PRINTS | PR00367 | 7.6E-12 | 74 | 85 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.6E-12 | 96 | 112 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008219 | Biological Process | cell death | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051707 | Biological Process | response to other organism | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MCGGAIIADF IPRRDRSLAA SDLWPNSFGK DDDFGFGYSQ IANQQPSTVK TAQAPKVSEK 60 VDTKPVKRQR KNLYRGIRQR PWGKWAAEIR DPRKGVRVWL GTFNTAEEAA RAYDREARKI 120 RGKKAKVNFP NEDDEYSIQA RNPIPPLPFA TQKPTPYQQQ YRCDLNNAPT NLNLEFGYDL 180 NHTGAFSSHV DTVNADSVVA SGDENSGLAS GSEGAHSTNE FMGSGEKGNG YFNGTAIEKE 240 KEIEVIEAEE EKNKLQELSE ELMAYENYMK FYQIPYYDGQ SMPPNNVQES VVGDLWSFD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-21 | 74 | 132 | 15 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00109 | PBM | Transfer from AT3G16770 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g19130.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017413379.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-3-like | ||||
TrEMBL | A0A0L9TWK7 | 0.0 | A0A0L9TWK7_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SSI6 | 0.0 | A0A0S3SSI6_PHAAN; Uncharacterized protein | ||||
STRING | XP_007145186.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6771 | 34 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 2e-36 | ethylene-responsive element binding protein |
Publications ? help Back to Top | |||
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