PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g18480.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 333aa    MW: 36621.8 Da    PI: 4.5954
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g18480.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.46.1e-09198245355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++   +r+RR+ri + +  L ellP++        s a iL   ++Y+k+Lq
  Vang06g18480.1 198 EKARVTDRQRRQRIADNLKALHELLPNP-----AEGSQAYILDDIIDYVKYLQ 245
                     6678899********************8.....589****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.71E-11192255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-11194257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.525195244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-6197245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.67E-7200249No hitNo description
SMARTSM003536.1E-4201250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEEQSNEEIP VQLTSCDTGG TTNDVSHSAE GHLIPNPKFF IAASSGRNES HWTCFPKPSH  60
NYVKYLSESS TYLPNTSTDY MMGGSYLPVG SITDGNVVNG SDRNFFYNDP GKVCAFKPIG  120
SSSNDLEIKK QVGFWRADEG EEVIKVETES SQNFLYAESH PLWTADSLGD KHNALHDPMV  180
MVGAPASLPK SGSSSSKEKA RVTDRQRRQR IADNLKALHE LLPNPAEGSQ AYILDDIIDY  240
VKYLQLQIKE QSGSRLQEES TGIPLVFHEG YGHYINQQML NEPLEEIMGK LLEEHSAGAG  300
QLLESKGLFL LPMALVDDLS EAMQTFGESA LV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g18480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017414306.10.0PREDICTED: transcription factor bHLH83
TrEMBLA0A0S3SS210.0A0A0S3SS21_PHAAN; Uncharacterized protein
STRINGXP_007144615.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF121642426
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.14e-21LJRHL1-like 2