PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g17820.1 | ||||||||
Common Name | LR48_Vigan02g107600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NF-YB | ||||||||
Protein Properties | Length: 152aa MW: 16946 Da PI: 5.8278 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 177.6 | 1.2e-55 | 40 | 135 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++walatlGf+dy+eplk yl+kyrelege Vang06g17820.1 40 KEQDRLLPIANVGRIMKQTLPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDDYAEPLKRYLHKYRELEGE 134 89*******************************************************************************************99 PP NF-YB 97 k 97 + Vang06g17820.1 135 R 135 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.0E-53 | 36 | 142 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.33E-40 | 42 | 141 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.6E-28 | 45 | 109 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.5E-20 | 73 | 91 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 76 | 92 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 1.5E-20 | 92 | 110 | No hit | No description |
PRINTS | PR00615 | 1.5E-20 | 111 | 129 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MGDNINIGKV LDREGFKYNF TCSTSTATAS DTSAQDGVIK EQDRLLPIAN VGRIMKQTLP 60 PNAKISKEAK ETMQECVSEF ISFVTGEASD KCHKEKRKTV NGDDICWALA TLGFDDYAEP 120 LKRYLHKYRE LEGERATQNK SNTYENNIAN I* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 1e-45 | 39 | 130 | 1 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 1e-45 | 39 | 130 | 1 | 92 | Transcription factor HapC (Eurofung) |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g17820.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017413038.1 | 1e-111 | PREDICTED: nuclear transcription factor Y subunit B-5 | ||||
Swissprot | O82248 | 2e-60 | NFYB5_ARATH; Nuclear transcription factor Y subunit B-5 | ||||
TrEMBL | A0A0L9TWP1 | 1e-110 | A0A0L9TWP1_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SS71 | 1e-110 | A0A0S3SS71_PHAAN; Uncharacterized protein | ||||
STRING | XP_007144547.1 | 1e-100 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF805 | 32 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47810.1 | 7e-62 | nuclear factor Y, subunit B5 |
Publications ? help Back to Top | |||
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