PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g17620.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bHLH | ||||||||
Protein Properties | Length: 505aa MW: 55248.4 Da PI: 5.414 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36 | 1.3e-11 | 356 | 402 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ +I +Lq Vang06g17620.1 356 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITFITDLQ 402 799***********************66......*****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 4.2E-44 | 51 | 227 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.259 | 352 | 401 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.39E-13 | 355 | 406 | No hit | No description |
SuperFamily | SSF47459 | 2.09E-17 | 355 | 420 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-17 | 356 | 422 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.5E-9 | 356 | 402 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.6E-13 | 358 | 407 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 2.02E-5 | 436 | 503 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 505 aa Download sequence Send to blast |
MMGEKFCLNE EDKGVLESVL GAEAVAFFIS ALSNNVFSSV VAPSVGADST LRQRLCQLVD 60 GSKWNYAVFW QVAGLKSGGS ALIWGDGHCS DPKGKRSSMG KDDEQEVRKM VLQKLDACFG 120 GSVSKEANYA RLDRLSDLLM FYLSSMCYIF GFDSPCGPGS SFKSGKWIWT SDAAACLNQL 180 ESRSFLGKVA GLQTVVFVPL KSGVVELGSN EVVSEEQGFV EMVKTAFGES SPGQTKVFPK 240 IFGHELSLGD TKSQSITISF SPKVEDDPGF TSDSFEVQAL GLNHAYGNSS NGTLGDSSEG 300 KMFPQLNQMM GGNFNAQARV PCLDLGNEDT SSIHADERKP RKRGRKPANG REEPLNHVEA 360 ERQRREKLNQ RFYALRAVVP NISKMDKASL LGDAITFITD LQMKIKVLEA EKNMINNKDQ 420 KLSLPDMDFQ EREDDTVVTV RCPLDTHPVS DVVKTFREHQ IVAQDTNVST TDDKIIHTFS 480 IRTEGGEAAA IQLKEKLEAA LSKN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 4e-28 | 350 | 424 | 2 | 76 | Transcription factor MYC2 |
5gnj_B | 4e-28 | 350 | 424 | 2 | 76 | Transcription factor MYC2 |
5gnj_E | 4e-28 | 350 | 424 | 2 | 76 | Transcription factor MYC2 |
5gnj_F | 4e-28 | 350 | 424 | 2 | 76 | Transcription factor MYC2 |
5gnj_G | 4e-28 | 350 | 424 | 2 | 76 | Transcription factor MYC2 |
5gnj_I | 4e-28 | 350 | 424 | 2 | 76 | Transcription factor MYC2 |
5gnj_M | 4e-28 | 350 | 424 | 2 | 76 | Transcription factor MYC2 |
5gnj_N | 4e-28 | 350 | 424 | 2 | 76 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 337 | 345 | RKPRKRGRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00099 | PBM | Transfer from AT4G16430 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g17620.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017411823.1 | 0.0 | PREDICTED: transcription factor bHLH3 | ||||
Refseq | XP_017411824.1 | 0.0 | PREDICTED: transcription factor bHLH3 | ||||
Swissprot | A0A3Q7H216 | 1e-178 | MTB3_SOLLC; Transcription factor MTB3 | ||||
TrEMBL | A0A0S3SRS1 | 0.0 | A0A0S3SRS1_PHAAN; Uncharacterized protein | ||||
STRING | XP_007144718.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8263 | 34 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16430.1 | 1e-155 | bHLH family protein |
Publications ? help Back to Top | |||
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