PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g17230.1
Common NameLR48_Vigan02g121700
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HSF
Protein Properties Length: 357aa    MW: 41442.1 Da    PI: 6.3052
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g17230.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.51.2e-34441342101
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k++++++d+ ++++isws++g+sfvv+d+++f+ ++Lp+yFkhsnf+SFvRQLn+YgF+k++ ++         w+F+++ F +g+k+ll++
  Vang06g17230.1  44 FLTKTFDVVDDPVTNHVISWSRDGTSFVVWDPHTFSASLLPRYFKHSNFSSFVRQLNTYGFRKIDPDR---------WQFANEGFIRGHKHLLKS 129
                     9****************************************************************999.........****************** PP

                     XXXXX CS
    HSF_DNA-bind  97 ikrkk 101
                     i+r++
  Vang06g17230.1 130 IRRRR 134
                     ***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.8E-5840133IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.99E-3440133IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.9E-3740133IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.5E-194467IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.9E-3144133IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.5E-198294IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434083107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.5E-1995107IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MNYIYPVKEE CLESALPPSS SYQLGNEYPP KPIEELHYAG PPPFLTKTFD VVDDPVTNHV  60
ISWSRDGTSF VVWDPHTFSA SLLPRYFKHS NFSSFVRQLN TYGFRKIDPD RWQFANEGFI  120
RGHKHLLKSI RRRRAPSQLT QSHSVEVGRF ELDKEVDRLK HEKIVLMMEL MNLRQQQQKA  180
RMCIKEMEQR LQVTEIKQKH MMAFLARAIK NPAFIHQLLK KEKRKDLEEA LTKKRRQIKQ  240
GVRGIGESSS RGEGRSSVKV EALEFGEYDC DFGVSELEKL AMEMQGCGKG RIDREVEPEA  300
PESQERLDRV LDEEFWEELM FSEKFDGRFD IPTTEDNDED VVNILANELG CLDSSH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-223913312120Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120133RGHKHLLKSIRRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g17230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017413704.10.0PREDICTED: heat stress transcription factor A-7a-like
SwissprotQ9LUH81e-104HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A0L9TXE80.0A0A0L9TXE8_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SRW00.0A0A0S3SRW0_PHAAN; Uncharacterized protein
STRINGXP_007144664.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.16e-94heat shock transcription factor A6B
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]