PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g16810.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 466aa    MW: 51987.9 Da    PI: 7.4989
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g16810.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.51.4e-14340386455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  Vang06g16810.1 340 NHVLAERRRREKLNERFVILRSLVPFV-----TKMDKASILGDTIEYVKQLR 386
                     7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.3E-3913159IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.606336385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.86E-19338404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-19340403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.61E-16340390No hitNo description
PfamPF000103.9E-12340385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-18342391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
LLGTMAAPLG NKLQSMLQAA VQSVHWTYSL FWQLCPQQVI LVWGDGYYNG AIKTRKTVQP  60
MEVSAEEASL QRSQQLRELY ESLSAGETNP PTRRPCAALS PEDLTESEWF YLMCVSFSFP  120
PGVGLPGKAF ARRQHVWLTG ANEVDSKTFS RAILAKMEDV TRAEPSELMQ LELPEDIRVG  180
SPNDGSNNLD SDFHLLAVSQ GGNAAGQAES SVRWGPSEEA LQVQLPASAP HLLDDLTQED  240
NHYSETVSNI LQNQSSRWPT SPTSVGYITY STHSAFTKWS SRASHLFHPA VDGPSQWLLK  300
YILFTVPYLH AKNPADTSPQ TAADPKLRGK GTPQDELSAN HVLAERRRRE KLNERFVILR  360
SLVPFVTKMD KASILGDTIE YVKQLRRKIQ ELEARNRHTE AEHRSKLPEM LREVRIEVIG  420
VQSSISNGVF MAELRAKVKE HANGKKVSIV EVKKALNQII PHPLH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-17111527149Transcription factor MYC3
4rqw_B3e-17111527149Transcription factor MYC3
4rru_A4e-171115246188Transcription factor MYC3
4rs9_A3e-17111527149Transcription factor MYC3
4ywc_A4e-171115246188Transcription factor MYC3
4ywc_B4e-171115246188Transcription factor MYC3
4yz6_A3e-17111527149Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1344349ERRRRE
2345350RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g16810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027189966.10.0basic helix-loop-helix protein A isoform X1
SwissprotE3SXU41e-127BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A3Q7XZG80.0A0A3Q7XZG8_CICAR; basic helix-loop-helix protein A isoform X1
STRINGGLYMA02G16670.21e-143(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36373249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.13e-78bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]