PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g16490.2
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 386aa    MW: 42815.3 Da    PI: 6.3094
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g16490.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.92.7e-16308354455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  Vang06g16490.2 308 VHNLSERRRRDRINEKMKALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 354
                     6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.2E-21301364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.29E-20302365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.146304353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.47E-16307358No hitNo description
PfamPF000107.8E-14308354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-18310359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MSDSFSTKIK SKMNHCVPDF EIQMDDDEEF PIPVSKKPSM QNDEIMELLW QNGQVVMHSQ  60
NHRPLRKPPH TLVAGGVSPA RDIRSSEAEN YGNQHLFMQE DEMASWLHYP IHEDPPPFDH  120
HDFSADMLNP PPTNEIASVT HNSAAIQSSF RTTELRHPAP RPPIPPSRRP VPAANRMQNF  180
SHFSNHGNSS SSSKATAAQP TVVDSCETPV ATAEHAETGR ASVTAADAGK VAESGRRETA  240
TCDVTVTSSP GGSSGSAEPV QRELDRKRKG REPEESEFLS EDVDFESPEA KKQGRGSTST  300
KRSRAAEVHN LSERRRRDRI NEKMKALQEL IPRCNKSDKA SMLDEAIEYL KSLQLQVQAM  360
NQPNVSKPST SRGQENPEKH QSEET*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1312317ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g16490.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017411305.10.0PREDICTED: transcription factor PIF1-like isoform X1
TrEMBLA0A0S3SRN20.0A0A0S3SRN2_PHAAN; Uncharacterized protein
STRINGXP_007144439.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.33e-55phytochrome interacting factor 3-like 5