PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang06g16490.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

bHLH

Protein Properties

Length: 448aa MW: 49617.1 Da PI: 6.7367

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang06g16490.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.2	3.9e-10	308	334	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 hn ErrRRdriN+++ L+el+P + Vang06g16490.1 308 VHNLSERRRRDRINEKMKALQELIPRC 334 6************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.79E-9	302	339	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.756	304	356	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.7E-11	307	336	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.39E-7	307	340	No hit	No description
Pfam	PF00010	9.2E-8	308	334	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence Send to blast
MSDSFSTKIK SKMNHCVPDF EIQMDDDEEF PIPVSKKPSM QNDEIMELLW QNGQVVMHSQ 60 NHRPLRKPPH TLVAGGVSPA RDIRSSEAEN YGNQHLFMQE DEMASWLHYP IHEDPPPFDH 120 HDFSADMLNP PPTNEIASVT HNSAAIQSSF RTTELRHPAP RPPIPPSRRP VPAANRMQNF 180 SHFSNHGNSS SSSKATAAQP TVVDSCETPV ATAEHAETGR ASVTAADAGK VAESGRRETA 240 TCDVTVTSSP GGSSGSAEPV QRELDRKRKG REPEESEFLS EDVDFESPEA KKQGRGSTST 300 KRSRAAEVHN LSERRRRDRI NEKMKALQEL IPRCNKVNRI IKFPTTPAAH LGPRFPPVPP 360 FHIPHVPAPD SSRMPAPNLS DNSMLNALGT QGPDQSRIPN YTDPYQQYVG LQQVQLQLMQ 420 AMNQPNVSKP STSRGQENPE KHQSEET*

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence Send to blast

MSDSFSTKIK SKMNHCVPDF EIQMDDDEEF PIPVSKKPSM QNDEIMELLW QNGQVVMHSQ  60
NHRPLRKPPH TLVAGGVSPA RDIRSSEAEN YGNQHLFMQE DEMASWLHYP IHEDPPPFDH  120
HDFSADMLNP PPTNEIASVT HNSAAIQSSF RTTELRHPAP RPPIPPSRRP VPAANRMQNF  180
SHFSNHGNSS SSSKATAAQP TVVDSCETPV ATAEHAETGR ASVTAADAGK VAESGRRETA  240
TCDVTVTSSP GGSSGSAEPV QRELDRKRKG REPEESEFLS EDVDFESPEA KKQGRGSTST  300
KRSRAAEVHN LSERRRRDRI NEKMKALQEL IPRCNKVNRI IKFPTTPAAH LGPRFPPVPP  360
FHIPHVPAPD SSRMPAPNLS DNSMLNALGT QGPDQSRIPN YTDPYQQYVG LQQVQLQLMQ  420
AMNQPNVSKP STSRGQENPE KHQSEET*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	312	317	ERRRRD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang06g16490.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017411305.1	0.0	PREDICTED: transcription factor PIF1-like isoform X1
TrEMBL	A0A0S3SRN2	0.0	A0A0S3SRN2_PHAAN; Uncharacterized protein
STRING	XP_007144439.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4607	33	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20180.3	7e-39	phytochrome interacting factor 3-like 5