PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g16420.1 | ||||||||
Common Name | LR48_Vigan1086s000200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | LBD | ||||||||
Protein Properties | Length: 202aa MW: 22287.7 Da PI: 6.4078 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 68.4 | 1.6e-21 | 7 | 64 | 1 | 57 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeereda 57 +C aCk+lrrkC+++Cv+apyf++eq + +fa++hk+FGasnv+kll++lp ++r+++ Vang06g16420.1 7 PCGACKFLRRKCVRGCVFAPYFCHEQgATHFAAIHKVFGASNVSKLLAHLPVTDRSQL 64 7*************************89************************999776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 13.593 | 6 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-19 | 7 | 65 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MTGSGSPCGA CKFLRRKCVR GCVFAPYFCH EQGATHFAAI HKVFGASNVS KLLAHLPVTD 60 RSQLAYLKEQ AAQSCLNASV SENPSEKLFE KSSGALPQDL QSWFQVENSN LGPEFLPNMC 120 TNFSTQKHYG NNALIEDLNP TGINYENSGA MEENSSFSSF DESSNSYSMS YDMHTNRRTW 180 GFHEVEDLHS VAFGYSTRTH S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-20 | 3 | 69 | 7 | 76 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-20 | 3 | 69 | 7 | 76 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g16420.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017411276.1 | 1e-132 | PREDICTED: LOB domain-containing protein 29-like | ||||
TrEMBL | A0A0L9TIK4 | 1e-132 | A0A0L9TIK4_PHAAN; Uncharacterized protein | ||||
STRING | XP_007144924.1 | 1e-125 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3571 | 33 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42440.1 | 6e-38 | LBD family protein |
Publications ? help Back to Top | |||
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