PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g15470.1
Common NameLR48_Vigan02g153300
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 371aa    MW: 40708.2 Da    PI: 9.2832
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g15470.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.95.8e-16181227354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +ahn  Er+RRd+iN++++ Lrel+P++      K +Ka++L  A+eY+k L
  Vang06g15470.1 181 EAHNLCERKRRDKINKRMHILRELIPNC-----NKTDKASMLDDAIEYLKTL 227
                     69*************************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-19176242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.511178227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-19181236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-13181227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.41E-15181232No hitNo description
SMARTSM003532.1E-16184233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MYFPVQRDSA VNNLQPNFEQ SSCLRLPLKR VHMIKRAEFS KAASSSKGSE HSSVINSCNG  60
SVESQNPLSS DASNLVPDEQ SPAVGHNSGL GVRGSRGLHR NQKSSSVGFE GKGKAETKYS  120
DEALLESSSV CSLGASNNRN VCGRKHDDID DSVQNYEEAE DVVKEKPARE GTGVKRSRNA  180
EAHNLCERKR RDKINKRMHI LRELIPNCNK TDKASMLDDA IEYLKTLKLQ LQIMKMGGGF  240
CMPFMMLPGH GMMNAPHLQQ LMGVEMGLRS GTTIPCNLPQ FATTPLPAIT DNRVHMFRFP  300
NQVPTMPISH ASFIPMVGNP RIPTGTATNR AENPSHQLTT LLASLSKNSY LNGQTELATK  360
QPSNQVFPHQ *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186191ERKRRD
2187192RKRRDK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g15470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017414116.10.0PREDICTED: transcription factor PIF1-like isoform X2
TrEMBLA0A0L9TXR70.0A0A0L9TXR7_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SQX40.0A0A0S3SQX4_PHAAN; Uncharacterized protein
STRINGGLYMA10G27910.21e-158(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133291829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.26e-34phytochrome interacting factor 3
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]