PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g15460.1 | ||||||||
Common Name | LR48_Vigan02g153400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 435aa MW: 48601.1 Da PI: 7.2916 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.4 | 2.8e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l++ ++++G g+W+++++ g+ R++k+c++rw +yl Vang06g15460.1 14 KGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-28 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.116 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.24E-22 | 12 | 97 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.84E-12 | 17 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-11 | 65 | 105 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 8.074 | 66 | 105 | IPR017930 | Myb domain |
SMART | SM00717 | 0.66 | 66 | 103 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 435 aa Download sequence Send to blast |
MGRHSCCYKQ KLRKGLWSPE EDEKLLRHIT KYGHGCWSSV PKQAGLQRCG KSCRLRWINY 60 LRPDLKRGTF SQEEENLIIE LHAVLGNRTD NEIKNLWNSC LKKKLRQKGI DPVTHKPLSE 120 VENGDDTGKS QGKAPEVSNE LNLLKSESSK SDSASYEQRT SISPKAYAPE MDGSCSSKIY 180 SRSDSNFVTN NCYNKDLFLD RFMNSSRQES YNTSCQPSDL MGTFPIQMSY ATNDCLPNDS 240 NSTHWFGQTG RPFDMNSEFP FNAATSINHP TPTTNLFLPN SFCYKPSLAV PSDSVSTAYG 300 SHYWEASASN NSNSSIRSNG STELKGSSPL NIFSSWGLAE CSTSTTKEGQ IHMMENHTEE 360 AKWDEYLHNP ISMLASVQNQ APESLCNEIK TSMHLVPDTL GAMLPHSTKQ QEPSQTSSIF 420 SKDIQKLRAA FGNM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-20 | 12 | 105 | 5 | 108 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 100 | 106 | LKKKLRQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g15460.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017412487.1 | 0.0 | PREDICTED: transcription factor MYB29 | ||||
Refseq | XP_017412488.1 | 0.0 | PREDICTED: transcription factor MYB29 | ||||
TrEMBL | A0A0L9TYY3 | 0.0 | A0A0L9TYY3_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SQV4 | 0.0 | A0A0S3SQV4_PHAAN; Uncharacterized protein | ||||
STRING | XP_007145085.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1083 | 33 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01680.3 | 5e-81 | myb domain protein 55 |
Publications ? help Back to Top | |||
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