PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g15210.1
Common NameLR48_Vigan02g156400
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 726aa    MW: 78463 Da    PI: 6.7231
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g15210.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.73.3e-16469515455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  Vang06g15210.1 469 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 515
                     6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-20462525IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-20462523IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.349465514IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.63E-17468519No hitNo description
PfamPF000101.1E-13469515IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-17471520IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MPLYELYRLA REKLGTENNS TRASDQCSSP ENDFFELVWE NGQISSQGQS SKVRRSPSCK  60
SLPSHCLPSH SPKGRDKDVG YGANRIGKFR DLDSGLNEIS MSVPSREVDF CQDEDVLPWF  120
DYPTMDGSLQ HDYGSDFLPA PTSFTLSDKK SNSSMALRDS HKTSEEQGNA FKDSSAEQVG  180
TVEPKASTNQ LYPPSLHHCQ TSFVSSRSRT SDITENNNTS NANQDATYGE ITNFLSSSSD  240
FSSPKGKKQE PPLPGNGSSS TIMNFSHFAR PAAKVRANLQ NIGLKSGLSS ARSDSMEIKN  300
KDAAATSSNP PESIVIDSSG ECPKELTMHC QQNVDQSKTD LNTSLLKAVE QNAVLSKQSE  360
TACNESSTKI DQIADQVLGD SGAKGQTTAE KSMEAAVASS SVCSGNGADR GSDEPNKNLK  420
RKRKDTDDSE CHSEKTFYMK DAEEESAGVK KASGGRGGTG SKRTRAAEVH NLSERRRRDR  480
INEKMRALQE LIPNCNKVDK ASMLDEAIEY LKTLQLQVQI MSMGAGLYMP PMMLPAGMQH  540
MHAPHMAPFS PMGVGMHMGY GMGYGVGMPD MNGGSSRFPM IQVPQMQGNH IPVAQMSGPT  600
ALHEMAGSNL PRLGLPGQVH PMPMPRAPML PFSGGPVMNS SALGLHACGL SGLVETVDTA  660
SASGLKDQMP NVGPLVKQST GGRDSTSQMP TQKFLPNLLM HLLPWTELKS EKPIALYFCP  720
CALCY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1473478ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g15210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017415117.10.0PREDICTED: transcription factor PIF3-like isoform X1
RefseqXP_017415118.10.0PREDICTED: transcription factor PIF3-like isoform X1
TrEMBLA0A0L9TZ160.0A0A0L9TZ16_PHAAN; Uncharacterized protein
STRINGXP_007145054.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52713353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.23e-58phytochrome interacting factor 3
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]