PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g14300.3 | ||||||||
Common Name | LR48_Vigan02g142000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 139aa MW: 15318.6 Da PI: 10.0559 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.4 | 0.00046 | 16 | 38 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs+ L H +H Vang06g14300.3 16 FQCKTCNRKFSSFQALGGHRASH 38 89**********99999998887 PP | |||||||
2 | zf-C2H2 | 14.3 | 0.00012 | 58 | 80 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ Fs L H+r+H Vang06g14300.3 58 HECSICGQGFSLGQALGGHMRKH 80 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 8.9E-4 | 13 | 34 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.263 | 16 | 43 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.68E-9 | 16 | 80 | No hit | No description |
SMART | SM00355 | 0.099 | 16 | 38 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 9.7E-11 | 16 | 40 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 18 | 38 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 5.6E-5 | 56 | 82 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 3.0E-9 | 57 | 82 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.575 | 58 | 85 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.11 | 58 | 80 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 60 | 80 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
MVAVLKRQRE NESEEFQCKT CNRKFSSFQA LGGHRASHKK PKLEGEEGKD LSRKPKTHEC 60 SICGQGFSLG QALGGHMRKH RGGMNEGFSS VIAEAPLLKR SNSSKRVMCL ELDLNLTPLE 120 NDLKLLFGNK APTVHLSL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 38 | 53 | KKPKLEGEEGKDLSRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g14300.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017414050.1 | 4e-97 | PREDICTED: zinc finger protein ZAT11-like | ||||
Swissprot | Q9SLD4 | 1e-41 | ZAT11_ARATH; Zinc finger protein ZAT11 | ||||
TrEMBL | A0A0L9TXJ7 | 1e-95 | A0A0L9TXJ7_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SRD8 | 1e-95 | A0A0S3SRD8_PHAAN; Uncharacterized protein | ||||
STRING | XP_007144473.1 | 9e-79 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF316 | 34 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 5e-44 | C2H2 family protein |
Publications ? help Back to Top | |||
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