PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g14290.3 | ||||||||
Common Name | LR48_Vigan02g141900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 151aa MW: 17004 Da PI: 10.7341 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11 | 0.0014 | 25 | 47 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C++ Fs+ L H +H Vang06g14290.3 25 FECRTCNRKFSSFQALGGHRASH 47 89**********99999998887 PP | |||||||
2 | zf-C2H2 | 16.5 | 2.4e-05 | 70 | 92 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk Fs L H+++H Vang06g14290.3 70 HECSICGKKFSLGQALGGHMKRH 92 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.66E-9 | 25 | 92 | No hit | No description |
PROSITE profile | PS50157 | 10.492 | 25 | 52 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 9.1E-4 | 25 | 43 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.33 | 25 | 47 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 5.6E-10 | 25 | 48 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 27 | 47 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.1E-5 | 62 | 92 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.097 | 70 | 92 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.03 | 70 | 92 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 2.8E-10 | 70 | 93 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 72 | 92 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0071289 | Biological Process | cellular response to nickel ion | ||||
GO:2000280 | Biological Process | regulation of root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
LANCLVLLSR PIEIKPHKLF RPQEFECRTC NRKFSSFQAL GGHRASHKTP KQDVKEEEKI 60 LRLGNKTKKH ECSICGKKFS LGQALGGHMK RHRIALNEGF SSINQALVKV PILKRSNTTR 120 VMCLDLNLTP LQNDLKLLFG DKAPRVDSFV * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g14290.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017414343.1 | 1e-107 | PREDICTED: zinc finger protein ZAT11 | ||||
Swissprot | Q9SLD4 | 4e-40 | ZAT11_ARATH; Zinc finger protein ZAT11 | ||||
TrEMBL | A0A0L9TYK5 | 1e-105 | A0A0L9TYK5_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SRD2 | 1e-105 | A0A0S3SRD2_PHAAN; Uncharacterized protein | ||||
STRING | XP_007144472.1 | 1e-88 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 1e-42 | C2H2 family protein |
Publications ? help Back to Top | |||
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