PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang06g14290.2

Common Name

LR48_Vigan02g141900

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

C2H2

Protein Properties

Length: 161aa MW: 18249.3 Da PI: 10.6883

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang06g14290.2	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.8	0.0015	35	57	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C++ Fs+ L H +H Vang06g14290.2 35 FECRTCNRKFSSFQALGGHRASH 57 89**********99999998887 PP
2	zf-C2H2	16.4	2.6e-05	80	102	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk Fs L H+++H Vang06g14290.2 80 HECSICGKKFSLGQALGGHMKRH 102 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	0.001	35	53	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.33	35	57	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	3.1E-9	35	102	No hit	No description
Pfam	PF13912	6.2E-10	35	58	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.492	35	62	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	37	57	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	3.5E-5	72	102	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.03	80	102	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.097	80	102	IPR007087	Zinc finger, C2H2
Pfam	PF13912	3.1E-10	80	103	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	82	102	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin
GO:0071289	Biological Process	cellular response to nickel ion
GO:2000280	Biological Process	regulation of root development
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MKRQREDSVD LANCLVLLSR PIEIKPHKLF RPQEFECRTC NRKFSSFQAL GGHRASHKTP 60 KQDVKEEEKI LRLGNKTKKH ECSICGKKFS LGQALGGHMK RHRIALNEGF SSINQALVKV 120 PILKRSNTTR VMCLDLNLTP LQNDLKLLFG DKAPRVDSFV *

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in stress responses. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang06g14290.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017414343.1	1e-115	PREDICTED: zinc finger protein ZAT11
Swissprot	Q9SLD4	2e-43	ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBL	A0A0L9TYK5	1e-113	A0A0L9TYK5_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3SRD2	1e-113	A0A0S3SRD2_PHAAN; Uncharacterized protein
STRING	XP_007144472.1	1e-94	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF316	34	175

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37430.1	1e-45	C2H2 family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]