PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g14000.1
Common NameLR48_Vigan02g138800
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 304aa    MW: 34941.1 Da    PI: 7.3181
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g14000.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1631.1e-50241521129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrF P+deelv +yL kkv+++++    ++ e+d++++ePw+Lp+ +k + +ewyfFs rd+kyatg r+nrat+sgyWkatgkd++v++ 
  Vang06g14000.1  24 LPPGFRFYPSDEELVLHYLYKKVTNEEILK-GTLMEIDLHTCEPWQLPEVAKLNANEWYFFSFRDRKYATGYRTNRATTSGYWKATGKDRTVFDP 117
                     79*************************877.78***************88888999**************************************9 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrle 129
                      ++e+vg++ktLvfy++rap+g kt W+mhe+rle
  Vang06g14000.1 118 sTREVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLE 152
                     77888***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.68E-6120170IPR003441NAC domain
PROSITE profilePS5100558.1824170IPR003441NAC domain
PfamPF023653.9E-2725151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
LPSSFTSQNN TTKFMGLRDI GASLPPGFRF YPSDEELVLH YLYKKVTNEE ILKGTLMEID  60
LHTCEPWQLP EVAKLNANEW YFFSFRDRKY ATGYRTNRAT TSGYWKATGK DRTVFDPSTR  120
EVVGMRKTLV FYRNRAPNGI KTGWIMHEFR LETPHMPPKE DWVLCRVFHK GKADNVNSAK  180
LMYENTVPSL TLASSSPTNQ TIGYNQLPHF SSSITPHHNH YHHHHHHQNQ TQNNNNSFMG  240
VLHFSRETNA NSSTITQISP KCDDGYGFLW DMEIEENSFH DAVASNMVDG MRFEVDNNSV  300
VLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-482317016165NO APICAL MERISTEM PROTEIN
1ut4_B4e-482317016165NO APICAL MERISTEM PROTEIN
1ut7_A4e-482317016165NO APICAL MERISTEM PROTEIN
1ut7_B4e-482317016165NO APICAL MERISTEM PROTEIN
4dul_A4e-482317016165NAC domain-containing protein 19
4dul_B4e-482317016165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g14000.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017413932.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
SwissprotQ84TE62e-61NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A0L9TXC40.0A0A0L9TXC4_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SRA60.0A0A0S3SRA6_PHAAN; Uncharacterized protein
STRINGXP_007144886.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43813359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.11e-93NAC domain containing protein 74
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  5. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  6. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  7. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]