PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g13800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 168aa MW: 18497.8 Da PI: 10.0383 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.2 | 4.1e-18 | 35 | 84 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr+++ +g+++AeIrd + ng r+++g+f+tae Aa a+++a+ + +g Vang06g13800.1 35 FRGVRRRP-WGKFAAEIRDSTRNG--VRVWIGTFDTAEAAALAYDQAAFSTRG 84 8*******.**********44465..**********************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.4E-34 | 34 | 98 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.313 | 34 | 92 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.7E-29 | 35 | 93 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-10 | 35 | 46 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-21 | 35 | 93 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.52E-17 | 35 | 93 | No hit | No description |
Pfam | PF00847 | 1.2E-12 | 35 | 84 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-10 | 58 | 74 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
LVSSESQVEV SSNLSDASEG HVVKEAQGPK EKRPFRGVRR RPWGKFAAEI RDSTRNGVRV 60 WIGTFDTAEA AALAYDQAAF STRGSMAVLN FPEEVVRESL KDMPNKPWED GSSPVLALKK 120 KHTMRRKSKA TNKKPKSVLV LEDLGSDYLE QLLSLTSSSS SSDHVFF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-28 | 31 | 95 | 11 | 75 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g13800.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017414156.1 | 2e-89 | PREDICTED: ethylene-responsive transcription factor 1B-like | ||||
Swissprot | A0A3Q7I5Y9 | 4e-53 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | A0A0L9TXA8 | 4e-88 | A0A0L9TXA8_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SR86 | 4e-88 | A0A0S3SR86_PHAAN; Uncharacterized protein | ||||
STRING | XP_007144904.1 | 2e-74 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 6e-43 | ethylene response factor 1 |
Publications ? help Back to Top | |||
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