PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g13770.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family AP2
Protein Properties Length: 759aa    MW: 85094.3 Da    PI: 8.4386
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g13770.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.83.6e-151764151
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaark 51
                    ++y+GVr ++ +g+++AeIrdp     +  r++lg+f taeeAa+a++  r+
  Vang06g13770.1 17 PRYRGVRHRP-WGKFAAEIRDPAR---HgGRVWLGTFLTAEEAARAYDLLRL 64
                    68*****888.**********944...249******************9876 PP
2AP254.72.6e-17444495256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y GVr ++ +g+++AeIrd + ng   r++lg+f++ae Aa a+++a+ +++g+
  Vang06g13770.1 444 SYIGVRKRP-WGKFAAEIRDTTRNG--SRVWLGTFDSAEAAALAYDQAAFSMRGH 495
                     599******.**********54465..**************************97 PP
3AP253.94.4e-17654704356
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                     y GVr ++ +g+++AeIrd +    + +r++lg+f tae Aa a+++a+ +++g+
  Vang06g13770.1 654 YIGVRKRP-WGKFAAEIRDTTR---SgRRVWLGTFETAEAAAIAYDQAAFSMRGH 704
                     89******.**********322...35**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.73E-201760No hitNo description
PfamPF008472.3E-91765IPR001471AP2/ERF domain
PROSITE profilePS5103219.0191861IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-151864IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.7E-221861IPR001471AP2/ERF domain
SMARTSM003802.2E-191883IPR001471AP2/ERF domain
PRINTSPR003672.8E-91930IPR001471AP2/ERF domain
PRINTSPR003672.8E-94258IPR001471AP2/ERF domain
SuperFamilySSF537564.08E-1787160No hitNo description
SMARTSM003800.0014267310IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-7280305IPR001471AP2/ERF domain
CDDcd000185.40E-17443503No hitNo description
SuperFamilySSF541714.97E-21444503IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-28444503IPR001471AP2/ERF domain
SMARTSM003801.3E-35444508IPR001471AP2/ERF domain
PROSITE profilePS5103222.286444502IPR001471AP2/ERF domain
PfamPF008471.7E-12444495IPR001471AP2/ERF domain
PROSITE profilePS5103222.431653711IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.7E-29653712IPR001471AP2/ERF domain
SMARTSM003803.8E-34653717IPR001471AP2/ERF domain
PfamPF008474.1E-12653704IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-21654712IPR016177DNA-binding domain
CDDcd000183.02E-17654712No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 759 aa     Download sequence    Send to blast
MEEDSSKDKN LHTKKEPRYR GVRHRPWGKF AAEIRDPARH GGRVWLGTFL TAEEAARAYD  60
LLRLFAVVSQ VSMSAFTVST NPGACRSVVS GVPLVAWPLF AEQKMNAVFV SEGMKVAVRM  120
AIGENGSVER GEIARVVKMM MEGEEEKELL HRMKQLKAVA TTINHIELTD APNDAQRQPF  180
REDFRSCEVF LPNDFFPRST PADYLFQLNN HQRTLSANLL ERTSGNANCF RPTTSSLVQF  240
HDSLSFNMSE ESTTEENTNK AKQLVAKSTA EVKKKERSYK EAAALAYDQA AFSMRGHNAV  300
LNFPVKRVKE SLQEIQYTCF SGSSPALALK ERHCILRKVS SQAKKCKGKH PSEDPTPSLL  360
VLEDLGVEYL EHLLSISDQS NPSSDWDMLQ EPSEILFESL SSNNAVLDPI QDSLSFDMVD  420
FSTAPAQGNH NQLVVKQVQN KEKSYIGVRK RPWGKFAAEI RDTTRNGSRV WLGTFDSAEA  480
AALAYDQAAF SMRGHNAVLN FPVKTVKESL QEIQYSFSNG SSPALALKER NFIQRKLSSR  540
ARKCKGKETS EAATPSVVVL EDLGVDYLEQ LLSMQLYSKL DSDFGKSPYW DMITLQEPSE  600
ILFQSLSSND VLDPLHDSLS FDMVDFSTAP AEGNHKEAKK LVVESEVKNR ERSYIGVRKR  660
PWGKFAAEIR DTTRSGRRVW LGTFETAEAA AIAYDQAAFS MRGHNAVLNF PVKRVKESLQ  720
EIQYTCFNGS SPALALKARH CKQKHLSKAK YYIQNSDQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2515713269ATERF1
3gcc_A2e-2515713269ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression during the plant development, and/or mediated by stress factors and by components of stress signal transduction pathways. Seems to be a key integrator of ethylene and jasmonate signals in the regulation of ethylene/jasmonate-dependent defenses. Can mediate resistance to necrotizing fungi (Botrytis cinerea and Plectosphaerella cucumerina) and to soil borne fungi (Fusarium oxysporum conglutinans and Fusiarium oxysporum lycopersici), but probably not to necrotizing bacteria (Pseudomonas syringae tomato). {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12060224, ECO:0000269|PubMed:12509529, ECO:0000269|PubMed:15242170, ECO:0000269|PubMed:9851977}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g13770.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Ethylene induction is completely dependent on functional ETHYLENE-INSENSITIVE2 (EIN2), ETHYLENE-INSENSITIVE3 (EIN3), which is itself a transcription factor and CORONATIVE-INSENSITIVE1 (COI1) proteins. Induction by jasmonate, B.cinerea or F.oxysporum as well as the synergistic induction by ethylene and jasmonate requires EIN2 and COI1. Induction by methyl jasmonate (MeJA) is independent of JAR1. Induction by salicylic acid (SA) is dependent on NPR1 but not on PAD4. Seems not to be induced by Alternaria brassicicola. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12060224, ECO:0000269|PubMed:12509529, ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:15242170, ECO:0000269|PubMed:9851977}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017413083.11e-125PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotQ8LDC87e-46ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLA0A4D6N0D60.0A0A4D6N0D6_VIGUN; Ethylene-responsive transcription factor 1
STRINGGLYMA13G18350.13e-97(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31133199
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.11e-39ethylene response factor 1
Publications ? help Back to Top
  1. Zarate SI,Kempema LA,Walling LL
    Silverleaf whitefly induces salicylic acid defenses and suppresses effectual jasmonic acid defenses.
    Plant Physiol., 2007. 143(2): p. 866-75
    [PMID:17189328]
  2. Vahabi K,Camehl I,Sherameti I,Oelmüller R
    Growth of Arabidopsis seedlings on high fungal doses of Piriformospora indica has little effect on plant performance, stress, and defense gene expression in spite of elevated jasmonic acid and jasmonic acid-isoleucine levels in the roots.
    Plant Signal Behav, 2013. 8(11): p. e26301
    [PMID:24047645]
  3. Kim HG, et al.
    GDSL LIPASE1 modulates plant immunity through feedback regulation of ethylene signaling.
    Plant Physiol., 2013. 163(4): p. 1776-91
    [PMID:24170202]
  4. Li J,Jia H,Wang J
    cGMP and ethylene are involved in maintaining ion homeostasis under salt stress in Arabidopsis roots.
    Plant Cell Rep., 2014. 33(3): p. 447-59
    [PMID:24306353]
  5. Zhong S, et al.
    Ethylene-orchestrated circuitry coordinates a seedling's response to soil cover and etiolated growth.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(11): p. 3913-20
    [PMID:24599595]
  6. Kim HG, et al.
    GDSL lipase 1 regulates ethylene signaling and ethylene-associated systemic immunity in Arabidopsis.
    FEBS Lett., 2014. 588(9): p. 1652-8
    [PMID:24631536]
  7. Schellingen K, et al.
    Cadmium-induced ethylene production and responses in Arabidopsis thaliana rely on ACS2 and ACS6 gene expression.
    BMC Plant Biol., 2014. 14: p. 214
    [PMID:25082369]
  8. Ellouzi H, et al.
    A comparative study of the early osmotic, ionic, redox and hormonal signaling response in leaves and roots of two halophytes and a glycophyte to salinity.
    Planta, 2014. 240(6): p. 1299-317
    [PMID:25156490]
  9. Nguyen AH, et al.
    Loss of Arabidopsis 5'-3' Exoribonuclease AtXRN4 Function Enhances Heat Stress Tolerance of Plants Subjected to Severe Heat Stress.
    Plant Cell Physiol., 2015. 56(9): p. 1762-72
    [PMID:26136597]
  10. Cheng MC,Kuo WC,Wang YM,Chen HY,Lin TP
    UBC18 mediates ERF1 degradation under light-dark cycles.
    New Phytol., 2017. 213(3): p. 1156-1167
    [PMID:27787902]
  11. Timmermann T, et al.
    Paraburkholderia phytofirmans PsJN Protects Arabidopsis thaliana Against a Virulent Strain of Pseudomonas syringae Through the Activation of Induced Resistance.
    Mol. Plant Microbe Interact., 2017. 30(3): p. 215-230
    [PMID:28118091]
  12. Yu Y,Huang R
    Integration of Ethylene and Light Signaling Affects Hypocotyl Growth in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 57
    [PMID:28174592]
  13. Lestari R, et al.
    Overexpression of Hevea brasiliensis ethylene response factor HbERF-IXc5 enhances growth and tolerance to abiotic stress and affects laticifer differentiation.
    Plant Biotechnol. J., 2018. 16(1): p. 322-336
    [PMID:28626940]
  14. Dinolfo MI,Castañares E,Stenglein SA
    Resistance of Fusarium poae in Arabidopsis leaves requires mainly functional JA and ET signaling pathways.
    Fungal Biol, 2017. 121(10): p. 841-848
    [PMID:28889908]