PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang06g11680.1

Common Name

LR48_Vigan747s000100

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

bHLH

Protein Properties

Length: 817aa MW: 90868 Da PI: 4.6747

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang06g11680.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.7	0.00012	610	647	13	55
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R++i +++ eLr ++P+ +K s + L ++++Y+ Lq Vang06g11680.1 610 RQQIQDCIKELRGIIPNG-----GKCSIDSLLDLTIRYMLFLQ 647 89************98.....7999999*******9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	2.9E-7	5	44	IPR025610	Transcription factor MYC/MYB N-terminal
Pfam	PF14215	2.4E-14	53	142	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	11.242	597	646	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.09E-6	610	660	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	0.00253	610	651	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 817 aa Download sequence Send to blast
MPLTLRNKLK TLCSSVDAWS YAIFWRFHPR NSLLLTVEEA YYEEHLGEEI ADMHPQVHLL 60 GEGIVGEAAF TGKHSWVHSD GQTHYWNPTG QSICEDDSCL HQQFSSGIKT IVVIPVKALG 120 VIQFGSRNKI LERVEFLEQT QSMLTEIDDD MGMFDMSENA VLPLDCENND LNGMLASISS 180 ASPNDPFPSH YKNYEEAMAS FQGDSSYLGD QLKGTTEAQV VWSDRNSIDV LLKHNSSTDN 240 FIAKTPYLGV CDGELSSFDL LEQLLVSSVR PQDVADACFM NGNASSTSKL PVQDSALVPF 300 CSMDRGSFQG KLQNSLDNQY SNQSSVVTDV DFSSTSYALH GHSESIEPVD MSEEILKFSS 360 MDDLCHWFGP SSEDSICKAV IAMDNKFSES TEFNPTSFDL VGSSSLNDVL VTGLAGYNSN 420 SDGNETSVVM QNTEKGPLDF MEIDFSYEQA NEWWGNTLTP VVSGVTDTGF SESISELISD 480 TLPGTRKRLF SELGIEELLR GGANYYPVNS SEFECGLSPN KRQTIESSSV NGSTRAELMQ 540 PLCDLDSANN LPSKKDTFSK LQAATWIDDS HSINIRKAVP KHPQKAEEHA KPTKKRARPG 600 ESPRPRPKDR QQIQDCIKEL RGIIPNGGKC SIDSLLDLTI RYMLFLQSVL KYSDKLREPN 660 EPKLIEQENE VVLKDSGVAD SKNCGITWAY EVGHETMLCP IIVEDMSPPG QMLIEMLCEV 720 QGIFLEIIDI IRGFGLNILK AKMERKKNKL WARFIVEANR HVTRIDVFWS LIHLLQQTNT 780 SGIDSSNKNW DALHANSIKS GPKVKSDPNQ HPNRHI*

Sequence ? help Back to Top

Protein Sequence Length: 817 aa Download sequence Send to blast

MPLTLRNKLK TLCSSVDAWS YAIFWRFHPR NSLLLTVEEA YYEEHLGEEI ADMHPQVHLL  60
GEGIVGEAAF TGKHSWVHSD GQTHYWNPTG QSICEDDSCL HQQFSSGIKT IVVIPVKALG  120
VIQFGSRNKI LERVEFLEQT QSMLTEIDDD MGMFDMSENA VLPLDCENND LNGMLASISS  180
ASPNDPFPSH YKNYEEAMAS FQGDSSYLGD QLKGTTEAQV VWSDRNSIDV LLKHNSSTDN  240
FIAKTPYLGV CDGELSSFDL LEQLLVSSVR PQDVADACFM NGNASSTSKL PVQDSALVPF  300
CSMDRGSFQG KLQNSLDNQY SNQSSVVTDV DFSSTSYALH GHSESIEPVD MSEEILKFSS  360
MDDLCHWFGP SSEDSICKAV IAMDNKFSES TEFNPTSFDL VGSSSLNDVL VTGLAGYNSN  420
SDGNETSVVM QNTEKGPLDF MEIDFSYEQA NEWWGNTLTP VVSGVTDTGF SESISELISD  480
TLPGTRKRLF SELGIEELLR GGANYYPVNS SEFECGLSPN KRQTIESSSV NGSTRAELMQ  540
PLCDLDSANN LPSKKDTFSK LQAATWIDDS HSINIRKAVP KHPQKAEEHA KPTKKRARPG  600
ESPRPRPKDR QQIQDCIKEL RGIIPNGGKC SIDSLLDLTI RYMLFLQSVL KYSDKLREPN  660
EPKLIEQENE VVLKDSGVAD SKNCGITWAY EVGHETMLCP IIVEDMSPPG QMLIEMLCEV  720
QGIFLEIIDI IRGFGLNILK AKMERKKNKL WARFIVEANR HVTRIDVFWS LIHLLQQTNT  780
SGIDSSNKNW DALHANSIKS GPKVKSDPNQ HPNRHI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang06g11680.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017410528.1	0.0	PREDICTED: transcription factor bHLH157-like isoform X2
TrEMBL	A0A0L9THR6	0.0	A0A0L9THR6_PHAAN; Uncharacterized protein
STRING	XP_007161572.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6955	16	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	3e-44	conserved peptide upstream open reading frame 7

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]