PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang06g10070.2

Common Name

LR48_Vigan10g092200

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

bHLH

Protein Properties

Length: 314aa MW: 34923.9 Da PI: 5.6235

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang06g10070.2	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.2	3.8e-10	127	157	1	31
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC. CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkas 31 +r++h ++Er+RR+++N+ ++ Lr+l+P ++ Vang06g10070.2 127 QRMTHIAVERNRRKQMNEYLSVLRSLMPDSY 157 79**************************964 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	8.35E-8	125	163	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.7E-8	125	160	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.801	126	178	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.56E-9	126	163	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.1E-7	127	157	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MALEAVVFSQ SQDPFGGYGS VKDFYNCTFL AATSPNWGDY EHININIHKE EEQGSISTFL 60 DNSNNQPDNY PYGGDWTSSS SSILPHLNDL QEATDPSNAT HSLDTLTTRP KRRRAKSRKN 120 KEEIENQRMT HIAVERNRRK QMNEYLSVLR SLMPDSYIQR ELEQRLHFLG AQKEGERKSD 180 AGGATNMPFS EFFAFPQYST SGGGGGSDNS ATVGEDVGEV KSGIADIEVT MVESHANLKI 240 RSKKRPKQLL KLVSGLHTMR LTILHLNVTT TGEIVLYSLS VKVEDDCKLG SVDDIAEAVY 300 QTLDRIQQEA VLN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	127	138	RMTHIAVERNRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang06g10070.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017438702.1	0.0	PREDICTED: transcription factor bHLH94-like
TrEMBL	A0A0L9VJ07	0.0	A0A0L9VJ07_PHAAN; Uncharacterized protein
STRING	XP_007144754.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	3e-66	bHLH family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]