PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g09890.4
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 92aa    MW: 9956.95 Da    PI: 6.0846
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g09890.4genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.73.8e-102263256
             AP2 32 slgkfgtaeeAakaaiaarkklege 56
                    +lg+f+taeeAa+a+++a+ +l+g+
  Vang06g09890.4  2 WLGTFDTAEEAARAYDRAAFNLRGH 26
                    ***********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-12134IPR016177DNA-binding domain
PROSITE profilePS5103213.867133IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-15134IPR001471AP2/ERF domain
CDDcd000181.49E-16133No hitNo description
SMARTSM003802.0E-5139IPR001471AP2/ERF domain
PfamPF008472.2E-6226IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
LWLGTFDTAE EAARAYDRAA FNLRGHLAIL NFPSEYYSQA PPSSSSSHGG GSTSSSGAYH  60
RPVFEIPCLD DKVLEDLLGQ SEEHKKKKKG E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1517340114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g09890.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150413e-83AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028220080.11e-45ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC52e-26ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A0B2Q0382e-44A0A0B2Q038_GLYSO; Ethylene-responsive transcription factor ERF098
TrEMBLA0A445F8183e-44A0A445F818_GLYSO; Ethylene-responsive transcription factor ERF098
STRINGGLYMA20G34560.15e-45(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-16ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]