PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g09890.3
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 125aa    MW: 14087.7 Da    PI: 9.3468
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g09890.3genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP269.55.9e-221566256
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    +y+GVr+++ +g+++AeIrdps++g   r +lg+f+taeeAa+a+++a+ +l+g+
  Vang06g09890.3 15 RYRGVRRRP-WGKYAAEIRDPSKQG--SRLWLGTFDTAEEAARAYDRAAFNLRGH 66
                    6********.**********98865..**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.0141573IPR001471AP2/ERF domain
SMARTSM003801.6E-381579IPR001471AP2/ERF domain
PfamPF008471.0E-151566IPR001471AP2/ERF domain
CDDcd000186.02E-301573No hitNo description
SuperFamilySSF541712.42E-241574IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.2E-331574IPR001471AP2/ERF domain
PRINTSPR003675.3E-121627IPR001471AP2/ERF domain
PRINTSPR003675.3E-123955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MEENQKGKQG KEEVRYRGVR RRPWGKYAAE IRDPSKQGSR LWLGTFDTAE EAARAYDRAA  60
FNLRGHLAIL NFPSEYYSQS HGGGSTSSSG AYHRPVFEIP CLDDKVLEDL LGQSEEHKKK  120
KKGE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-32101069114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g09890.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-129AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007144092.15e-74hypothetical protein PHAVU_007G128000g
SwissprotQ9LTC51e-42ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLV7BHZ71e-72V7BHZ7_PHAVU; Uncharacterized protein
STRINGXP_007144092.12e-73(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.18e-33ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]