PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g09880.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 91aa    MW: 10112.1 Da    PI: 4.6797
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g09880.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.76e-081243356
             AP2 33 lgkfgtaeeAakaaiaarkklege 56
                    lg+f taeeAa+a+++a+ +++g+
  Vang06g09880.2  1 LGTFNTAEEAARAYDRAAYAMRGP 24
                    79*******************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.023131IPR001471AP2/ERF domain
PfamPF008471.4E-4123IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-10132IPR016177DNA-binding domain
SMARTSM003800.0017137IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.2E-14133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
LGTFNTAEEA ARAYDRAAYA MRGPFAILNF PEEYPMTAVA SSSSSSSSRH ANVEARGRSD  60
QGRQVFEFEY LDDKLLEELL DFEDKKKRGP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1717542114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g09880.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150412e-84AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027938237.13e-36ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC52e-22ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A4D6N2Y46e-35A0A4D6N2Y4_VIGUN; Ethylene-responsive transcription factor 1
STRINGGLYMA20G34550.14e-27(Glycine max)
STRINGXP_010039174.14e-27(Eucalyptus grandis)
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]