PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g09880.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 136aa    MW: 15372.9 Da    PI: 7.5231
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g09880.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.3e-201868255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    +y+GVr+++ +g+++AeIrd +    + +r++lg+f taeeAa+a+++a+ +++g
  Vang06g09880.1 18 RYRGVRRRP-WGKFAAEIRDSTR---QgQRVWLGTFNTAEEAARAYDRAAYAMRG 68
                    6********.**********322...24*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.3E-341882IPR001471AP2/ERF domain
CDDcd000181.54E-161877No hitNo description
Gene3DG3DSA:3.30.730.108.3E-321878IPR001471AP2/ERF domain
PROSITE profilePS5103223.7361876IPR001471AP2/ERF domain
PfamPF008471.8E-151868IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-241877IPR016177DNA-binding domain
PRINTSPR003671.2E-111930IPR001471AP2/ERF domain
PRINTSPR003671.2E-114258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MDEEGSRGKT KDEPGDVRYR GVRRRPWGKF AAEIRDSTRQ GQRVWLGTFN TAEEAARAYD  60
RAAYAMRGPF AILNFPEEYP MTAGASSSSS SSSRHANVEA RGRSDQGRQV FEFEYLDDKL  120
LEELLDFEDK KKRGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-381812014114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g09880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-139AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027938237.18e-71ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC59e-41ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A4D6N2Y42e-69A0A4D6N2Y4_VIGUN; Ethylene-responsive transcription factor 1
STRINGGLYMA20G34550.12e-59(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43410.16e-24ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]