PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang06g09400.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

NF-YB

Protein Properties

Length: 217aa MW: 24066.3 Da PI: 8.7691

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang06g09400.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	132.8	1.1e-41	70	144	2	76
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGf 76 reqdr+lPian+srimkk l n+ki+kdak+t+qecvsefisf+tseas+kcq+ekrktingddllwa+atl f Vang06g09400.1 70 REQDRLLPIANISRIMKKGLSPNGKIAKDAKDTMQECVSEFISFITSEASEKCQKEKRKTINGDDLLWAMATLVF 144 89**********************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	5.12E-30	52	144	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	6.8E-40	66	144	IPR009072	Histone-fold
Pfam	PF00808	7.4E-28	75	139	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.0E-12	103	121	No hit	No description
PROSITE pattern	PS00685	0	106	122	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	1.0E-12	122	140	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
LRLFWKLERE KVWSSLQAFN HGCWEEKRRR REDMHKGFTK RVCEMSDVPV SPSHDSGGEQ 60 SPRASSSGAR EQDRLLPIAN ISRIMKKGLS PNGKIAKDAK DTMQECVSEF ISFITSEASE 120 KCQKEKRKTI NGDDLLWAMA TLVFISLPIL NCGLVFGWLS QGDTKGSARG GDGSARPDQV 180 GLAGQNSQLV HQGSLNYISL QVQPQHLVIP SMQSHE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	6e-34	70	144	2	76	Transcription factor HapC (Eurofung)
4g92_B	6e-34	70	144	2	76	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang06g09400.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	1e-126	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022641060.1	1e-104	nuclear transcription factor Y subunit B-1 isoform X1
Swissprot	Q8VYK4	8e-58	NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBL	A0A3Q0FAF5	1e-103	A0A3Q0FAF5_VIGRR; nuclear transcription factor Y subunit B-1 isoform X1
STRING	XP_007144163.1	1e-101	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2545	33	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37060.3	3e-60	nuclear factor Y, subunit B8

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]