PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g09200.3 | ||||||||
Common Name | LR48_Vigan09g105900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 329aa MW: 36559 Da PI: 8.6534 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.6 | 1.7e-19 | 162 | 211 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +kGVr+++ +g+WvAeIr p++ r+r++lg+f+tae+Aa a++ a+ l+ge Vang06g09200.3 162 FKGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEDAAIAYDTAAYILRGE 211 8******9.**********955...5************************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.43E-31 | 160 | 220 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.2E-31 | 161 | 219 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-33 | 161 | 224 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.2E-22 | 161 | 219 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.049 | 161 | 218 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-10 | 162 | 173 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.9E-12 | 162 | 211 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-10 | 184 | 200 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MKEEAPLATW ISHIPEKFNG PQDIKNVRER NRSNSIFPAS GTKNSSIPLN LLETLPPLTM 60 APCFDEPVAS LASSSAPPNF PNLTLVLQEP SMVYSSSSNM KSGEVMSVTS NPTYQVPHFG 120 QNQHQGCSDA HKTNKNLKSF NENWLSSTRT QPMKYGGRGK LFKGVRQRHW GKWVAEIRLP 180 RNRTRVWLGT FDTAEDAAIA YDTAAYILRG EYAQLNFPDL KHVIQANSLN GTTAALVEAK 240 LQAISQGVSS HRKPTDSPAG LSNKHTDENG KLKSTNDKNS TMKEWQFDNT EKSKSIHHDI 300 SDVETFQLSR MPSLDMDSIW DELLVSNS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 9e-21 | 157 | 218 | 1 | 63 | ATERF1 |
3gcc_A | 9e-21 | 157 | 218 | 1 | 63 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g09200.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017435506.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF062 | ||||
TrEMBL | A0A0L9VBG0 | 0.0 | A0A0L9VBG0_PHAAN; Uncharacterized protein | ||||
STRING | XP_007144182.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13620.1 | 5e-48 | ERF family protein |
Publications ? help Back to Top | |||
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