PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g09200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 401aa MW: 44408.9 Da PI: 8.8548 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.2 | 2.3e-19 | 234 | 283 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +kGVr+++ +g+WvAeIr p++ r+r++lg+f+tae+Aa a++ a+ l+ge Vang06g09200.1 234 FKGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEDAAIAYDTAAYILRGE 283 8******9.**********955...5************************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.27E-30 | 232 | 292 | No hit | No description |
SMART | SM00380 | 2.0E-33 | 233 | 296 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.38E-22 | 233 | 291 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.049 | 233 | 290 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.0E-31 | 233 | 291 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-11 | 234 | 283 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.8E-10 | 234 | 245 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.8E-10 | 256 | 272 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MKGTFPKKEI FTQKKFSTCL QEMETGSKFL DNAMIGVSHS LTASNHLHVL RSGENSSITS 60 SQQLLSCSNS TSMKEEAPLA TWISHIPEKF NGPQDIKNVR ERNRSNSIFP ASGTKNSSIP 120 LNLLETLPPL TMAPCFDEPV ASLASSSAPP NFPNLTLVLQ EPSMVYSSSS NMKSGEVMSV 180 TSNPTYQVPH FGQNQHQGCS DAHKTNKNLK SFNENWLSST RTQPMKYGGR GKLFKGVRQR 240 HWGKWVAEIR LPRNRTRVWL GTFDTAEDAA IAYDTAAYIL RGEYAQLNFP DLKHVIQANS 300 LNGTTAALVE AKLQAISQGV SSHRKPTDSP AGLSNKHTDE NGKLKSTNDK NSTMKEWQFD 360 NTEKSKSIHH DISDVETFQL SRMPSLDMDS IWDELLVSNS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-21 | 229 | 290 | 1 | 63 | ATERF1 |
3gcc_A | 4e-21 | 229 | 290 | 1 | 63 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g09200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017435506.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF062 | ||||
TrEMBL | A0A0L9VBG0 | 0.0 | A0A0L9VBG0_PHAAN; Uncharacterized protein | ||||
STRING | XP_007144182.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10102 | 31 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13620.1 | 1e-47 | ERF family protein |