PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g09170.3
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 114aa    MW: 12923.8 Da    PI: 10.3608
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g09170.3genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95e-182070255
             AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                    +y+GVr+++ +g+++AeIrdp   + k  r++lg+++ + +Aaka++ a+ +++g
  Vang06g09170.3 20 RYRGVRRRP-WGKFAAEIRDP---KrKGSRVWLGTYDCEIDAAKAYDCAAFRMRG 70
                    7********.**********8...4334**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.0E-342084IPR001471AP2/ERF domain
PfamPF008472.1E-132070IPR001471AP2/ERF domain
PROSITE profilePS5103223.7752078IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-222080IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.1E-312079IPR001471AP2/ERF domain
PRINTSPR003671.8E-132132IPR001471AP2/ERF domain
CDDcd000189.14E-212878No hitNo description
PRINTSPR003671.8E-136080IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
LADPIVPVKK EVTCCYEARR YRGVRRRPWG KFAAEIRDPK RKGSRVWLGT YDCEIDAAKA  60
YDCAAFRMRG QKAVLNFPLE AGRSHPEPNT SGRKRRRDCT ATVTTSTHVC HEK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-271779264ATERF1
3gcc_A2e-271779264ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19296RKRRR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g09170.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017434617.12e-80PREDICTED: ethylene-responsive transcription factor ERF107
SwissprotQ9LY051e-37EF106_ARATH; Ethylene-responsive transcription factor ERF106
TrEMBLA0A0S3SP835e-79A0A0S3SP83_PHAAN; Uncharacterized protein
STRINGXP_007144191.12e-62(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.11e-32ERF family protein
Publications ? help Back to Top
  1. Kim H,Go YS,Suh MC
    DEWAX2 Transcription Factor Negatively Regulates Cuticular Wax Biosynthesis in Arabidopsis Leaves.
    Plant Cell Physiol., 2018. 59(5): p. 966-977
    [PMID:29425344]