PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g09170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 204aa MW: 23133.1 Da PI: 8.052 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.2 | 1.7e-17 | 110 | 160 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + k r++lg+++ + +Aaka++ a+ +++g Vang06g09170.1 110 RYRGVRRRP-WGKFAAEIRDP---KrKGSRVWLGTYDCEIDAAKAYDCAAFRMRG 160 7********.**********8...4334**********99*************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.775 | 110 | 168 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-30 | 110 | 169 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-34 | 110 | 174 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.1E-13 | 110 | 160 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-21 | 110 | 170 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.9E-13 | 111 | 122 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.55E-22 | 118 | 168 | No hit | No description |
PRINTS | PR00367 | 3.9E-13 | 150 | 170 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MATEEEISTL KLMRQYLLGD ISDPFLTNLI PVKVEDSSPE LDLDSNSSEQ SNFCRFLEYF 60 DFEADKKPTD LTSHHNIQNS IATSPLKNSD LADPIVPVKK EVTCCYEARR YRGVRRRPWG 120 KFAAEIRDPK RKGSRVWLGT YDCEIDAAKA YDCAAFRMRG QKAVLNFPLE AGRSHPEPNT 180 SGRKRRRDCT ATVTTSTHVC HEK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 9e-27 | 109 | 169 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 182 | 186 | RKRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g09170.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017434617.1 | 1e-148 | PREDICTED: ethylene-responsive transcription factor ERF107 | ||||
TrEMBL | A0A0S3SP83 | 1e-151 | A0A0S3SP83_PHAAN; Uncharacterized protein | ||||
STRING | XP_007144191.1 | 1e-120 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5257 | 30 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07580.1 | 2e-32 | ERF family protein |